ViewGene
Locus Name:
GeneID:
Location:

GeneID:2973
TrivialName: PA14_66980
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_66980
PAO1 Ortholog Locus:PA5070
Sequence Length:804
Protein Length:267
Start: 5978620
Stop: 5979423
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08455.1|AE004920_5 (AE004920) transport protein TatC [Pseudomonas aeruginosa PAO1]
Identities = 266/267 (99%), Positives = 267/267 (100%)
Sequence:
ATGAGCGCCGATAAACCCGAGCAGCCCGAGCACGACCAGGAAATGCCCCTGGTCTCGCACCTGACCGAACTG
CGTACGCGCCTGCTGCGCAGCGTGGCGGCGATCTTCCTGATCTTCGCCGGCCTGTTCTACTTCTCGCAGAAG
ATCTACACCCTGGTCTCCGAGCCGTTGCGCCGCTTCCTTCCGGAAGGCACCAGCATGATCGCCACCGACGTC
GCCTCACCGTTCCTCGCGCCGTTCAAGCTGACCATGGTGGTGGCGCTGTTCCTCGCCATGCCGGTGATCCTC
GCGCAGGTCTGGGGCTTCATCGCGCCCGGCCTGTACAAGCACGAGAAGCGCGTGGCGCTGCCGCTGCTGGTG
TCCAGCATCATCCTGTTCTACGCCGGGATGGCCTTCGCCTACTTCCTGGTGTTCCCGATGATCTTCCACTTC
TTCGCCAGCGTGACGCCCGAGGGCGTGGCGATGATGACGGACATCAACAGCTACCTGGACTTCGTCCTGACC
CTGTTCTTCGCCTTCGGCGTCGCCTTCGAGATCCCGGTGGCCACGGTGCTGCTGATCTGGATCGGGGTGGTC
GACGTCGAGTACCTGAAGAAGATCCGCCCGTACGTGATCATCGGCTGCTTCGTGGTCGGCATGGTCCTGACC
CCGCCGGACATCTTCTCCCAGACCATGCTCGCGGTGCCGATGTGGCTGCTGTTCGAGATCGGCCTGCTGTTC
GGCCGCCTGGTACGCAAGCGCGGCGAGCATCCGGACGACCAACCGGCCAGCGACGGCGACCAGCCTCCGGCC
ACCCGCCAGTGA
Translation:
MSADKPEQPEHDQEMPLVSHLTELRTRLLRSVAAIFLIFAGLFYFSQKIYTLVSEPLRRFLPEGTSMIATDV
ASPFLAPFKLTMVVALFLAMPVILAQVWGFIAPGLYKHEKRVALPLLVSSIILFYAGMAFAYFLVFPMIFHF
FASVTPEGVAMMTDINSYLDFVLTLFFAFGVAFEIPVATVLLIWIGVVDVEYLKKIRPYVIIGCFVVGMVLT
PPDIFSQTMLAVPMWLLFEIGLLFGRLVRKRGEHPDDQPASDGDQPPATRQ*
AnnotationID:2981GeneID:2973
AnnotatorUID: diggins
Modification Date/Time: 2005-03-15 05:05:26
Gene Name:tatC
Confidence Code:2
GeneProduct:sec-independent protein translocase TatC
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(19) Protein secretion/export apparatus
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00902
Secondary Functional Category(ies):transport of small molecules
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO58583.1| (AE016874) sec-independent  protein translocase TatC [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 266

 Score =  447 bits (1150), Expect = e-125
 Identities = 221/267 (82%), Positives = 246/267 (92%), Gaps = 5/267 (1%)

>gb|AAN70583.1|AE016701_3 (AE016792) Sec-independent periplasmic protein translocator TatC
           [Pseudomonas putida KT2440]
          Length = 262

 Score =  423 bits (1087), Expect = e-118
 Identities = 211/261 (80%), Positives = 232/261 (88%), Gaps = 3/261 (1%)

>gb|AAO09406.1|AE016800_11 (AE016800) Sec-independent protein secretion pathway component TatC
           [Vibrio vulnificus CMCP6]
          Length = 249

 Score =  308 bits (789), Expect = 2e-83
 Identities = 142/243 (58%), Positives = 187/243 (76%)








 
Structural Features:
pfam00902, TatC, Sec-independent protein translocase protein (TatC).
CD-Length = 207 residues,  99.5% aligned
Score =  181 bits (461), Expect = 8e-47
Identities = 93/206 (45%), Positives = 130/206 (63%), Gaps = 3/206 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:5949




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23091




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34997




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2973_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2973
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4816
                           PA5070_tr
                           translation of PA5070
                           267
                           99.62
                           99.99
                           0
                           1364.0
     

     
     
137565
                           gb|AAG08455.1|AE004920_5
                           (AE004920) transport protein TatC [Pseudomonas aeruginosa PAO1]
                           267
                           99.62
                           99.99
                           0
                           1364.0
     

     
     
137566
                           gb|AAO58583.1|
                           (AE016874) sec-independent  protein translocase TatC [Pseudomonas syringae pv. tomato str. DC3000]
                           269
                           82.15
                           91.44
                           5
                           1153.0
     

     
     
137567
                           gb|AAN70583.1|AE016701_3
                           (AE016792) Sec-independent periplasmic protein translocator TatC [Pseudomonas putida KT2440]
                           268
                           78.73
                           86.56
                           7
                           1088.0
     

     
     
137568
                           emb|CAC29149.1|
                           (AJ299712) TatC protein [Pseudomonas stutzeri]
                           271
                           72.69
                           83.02
                           8
                           1028.0
     

     






      

          
GC ORFID: 45975How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5070Glimmer Score: 

          
Start: 5242304Stop: 5243107

          
Length: 804


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5070 translation of PA5070Homolog Bit Score 530.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3801 (ORF: BLASTX 446.0), t_PA5070 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCGCCGATAAACCCGAGCAGCCCGAGCACGACCAGGAAATGCCCCTGGTCTCGCACCTGACCGAACTG 
CGTACGCGCCTGCTGCGCAGCGTGGCGGCGATCTTCCTGATCTTCGCCGGCCTGTTCTACTTCTCGCAGAAG 
ATCTACACCCTGGTCTCCGAGCCGTTGCGCCGCTTCCTTCCGGAAGGCACCAGCATGATCGCCACCGACGTC 
GCCTCACCGTTCCTCGCGCCGTTCAAGCTGACCATGGTGGTGGCGCTGTTCCTCGCCATGCCGGTGATCCTC 
GCGCAGGTCTGGGGCTTCATCGCGCCCGGCCTGTACAAGCACGAGAAGCGCGTGGCGCTGCCGCTGCTGGTG 
TCCAGCATCATCCTGTTCTACGCCGGGATGGCCTTCGCCTACTTCCTGGTGTTCCCGATGATCTTCCACTTC 
TTCGCCAGCGTGACGCCCGAGGGCGTGGCGATGATGACGGACATCAACAGCTACCTGGACTTCGTCCTGACC 
CTGTTCTTCGCCTTCGGCGTCGCCTTCGAGATCCCGGTGGCCACGGTGCTGCTGATCTGGATCGGGGTGGTC 
GACGTCGAGTACCTGAAGAAGATCCGCCCGTACGTGATCATCGGCTGCTTCGTGGTCGGCATGGTCCTGACC 
CCGCCGGACATCTTCTCCCAGACCATGCTCGCGGTGCCGATGTGGCTGCTGTTCGAGATCGGCCTGCTGTTC 
GGCCGCCTGGTACGCAAGCGCGGCGAGCATCCGGACGACCAACCGGCCAGCGACGGCGACCAGCCTCCGGCC 
ACCCGCCAGTGA