ViewGene

Locus Name:
GeneID:
Location:

GeneID:2972
TrivialName: PA14_67050
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_67050
PAO1 Ortholog Locus:PA5076
Sequence Length:801
Protein Length:266
Start: 5985416
Stop: 5984616
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08461.1|AE004920_11 (AE004920) probable binding protein component of ABC transporter [Pseudomonas aeruginosa PAO1]
Identities = 266/266 (100%), Positives = 266/266 (100%)
Sequence:
ATGAAAAAGTATCTTGCTTCATTGGTTCTGGGCGTCTGCGCCCTGGTGGGCGTGGCTTCGGTCCAGGCGGCC
GGCGCGGTGGAGGACGCGGTCAAGCGCGGCACCCTGCGGGTCGGCATGGACCCGACCTACATGCCGTTCGAG
ATGACCAACAAGCGCGGCCAGATCATCGGCTTCGAAGTCGACCTGCTCAAGGCCATGGCCAAGTCCATGGGC
GTCAAGCTGGAGCTGGTCTCCACCAGCTACGACGGCATCATCCCGGCGCTGCTGACCGACAAGTTCGACATG
ATCGGCTCGGGCATGACCCTGACCCAGGAGCGCAACCTGCGCCTGAACTTCTCCGAGCCCTTCATCGTGGTC
GGCCAGACCCTGCTGGTGCGCAAGGAACTGGAAGGCAAGATCAAGTCCTACAAGGACCTGAACGATCCGCAG
TACAGCATCACCTCGAAGATCGGCACCACCGGTGAGATCGTTGCCCGCAAGCTGATCAGCAAGGCCAAGTAC
CACGGCTTCGACAACGAGCCGGAAGCGGTGATGGACGTGGTCAACGGCAAGGCTGACGCCTTCATCTACGAC
TCGCCCTACAACGTGGTGGCGGTGAGCAAGTTCGGCGCCGGCAAGCTGGTCTACCTCGACCAGCCGTTCACC
TACGAGCCGCTGGCGTTCGGCCTGAAGAAAGGCGACTACGACAGCATCAACTTCATCAACAACTTCCTCCAT
CAGATCCGCGAAGACGGCACCTATCAGCGCATCCACGACAAGTGGTTCAAGAACACCGAGTGGCTGAAGGAA
ATGGAATGA
Translation:
MKKYLASLVLGVCALVGVASVQAAGAVEDAVKRGTLRVGMDPTYMPFEMTNKRGQIIGFEVDLLKAMAKSMG
VKLELVSTSYDGIIPALLTDKFDMIGSGMTLTQERNLRLNFSEPFIVVGQTLLVRKELEGKIKSYKDLNDPQ
YSITSKIGTTGEIVARKLISKAKYHGFDNEPEAVMDVVNGKADAFIYDSPYNVVAVSKFGAGKLVYLDQPFT
YEPLAFGLKKGDYDSINFINNFLHQIREDGTYQRIHDKWFKNTEWLKEME*
AnnotationID:2980GeneID:2972
AnnotatorUID: diggins
Modification Date/Time: 2005-03-15 05:05:30
Gene Name:
Confidence Code:3
GeneProduct:putative amino acid ABC transporter, periplasmic amino acid-binding protein
Cell Localization:()
Synonyms:PA5076
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:smart00062,COG0834,pfam00497,cd00134
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN70589.1|AE016701_9 (AE016792) amino acid ABC transporter, periplasmic amino
           acid-binding protein [Pseudomonas putida KT2440]
          Length = 266

 Score =  457 bits (1175), Expect = e-128
 Identities = 221/266 (83%), Positives = 249/266 (93%), Gaps = 1/266 (0%)
Structural Features:
smart00062, PBPb, Bacterial periplasmic substrate-binding proteins
CD-Length = 222 residues,  99.5% aligned
Score =  171 bits (435), Expect = 7e-44
Identities = 86/225 (38%), Positives = 140/225 (62%), Gaps = 5/225 (2%)

pfam00497, SBP_bac_3, Bacterial extracellular solute-binding proteins, family 3.
CD-Length = 224 residues,  99.6% aligned
Score =  163 bits (415), Expect = 2e-41
Identities = 83/226 (36%), Positives = 137/226 (60%), Gaps = 7/226 (3%)

COG0834, HisJ, ABC-type amino acid transport/signal transduction systems, 
periplasmic component/domain 
[Amino acid transport and metabolism / Signal transduction mechanisms]
CD-Length = 275 residues,  99.3% aligned
Score =  162 bits (409), Expect = 5e-41
Identities = 98/275 (35%), Positives = 154/275 (56%), Gaps = 11/275 (4%)

cd00134, PBPb, Bacterial periplasmic transport system
CD-Length = 218 residues, 100.0% aligned
Score =  153 bits (388), Expect = 2e-38
Identities = 82/223 (36%), Positives = 127/223 (56%), Gaps = 7/223 (3%)
Genomic Context:
Comment:
ReferenceID:5947
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:23089
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:34993
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:2972_cdd.html
URL:
Homologs By Global Alignment
Gene ID:2972

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
4815 PA5076_tr translation of PA5076 266 99.99 99.99 0 1365.0
137560 gb|AAG08461.1|AE004920_11 (AE004920) probable binding protein component of ABC transporter [Pseudomonas aeruginosa PAO1] 266 99.99 99.99 0 1365.0
137561 gb|AAN70589.1|AE016701_9 (AE016792) amino acid ABC transporter, periplasmic amino acid-binding protein [Pseudomonas putida KT2440] 267 82.77 93.25 2 1177.0
137562 emb|CAE09431.1| (BX571657) BINDING COMPONENT OF ABC TRANSPORTER [Wolinella succinogenes] 267 51.31 75.65 1 757.0
137563 emb|CAE09430.1| (BX571657) BINDING PROTEIN COMPONENT ABC TRANSPORTER [Wolinella succinogenes] 271 49.44 71.21 9 722.0
GC ORFID: 45974How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA5076Glimmer Score:
Start: 5249100Stop: 5248300
Length: 801
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA5076 translation of PA5076Homolog Bit Score 530.0
Other Homologs: t_PA5076 (ORF: GLIMMER)
GC ORF Sequence
ATGAAAAAGTATCTTGCTTCATTGGTTCTGGGCGTCTGCGCCCTGGTGGGCGTGGCTTCGGTCCAGGCGGCC
GGCGCGGTGGAGGACGCGGTCAAGCGCGGCACCCTGCGGGTCGGCATGGACCCGACCTACATGCCGTTCGAG
ATGACCAACAAGCGCGGCCAGATCATCGGCTTCGAAGTCGACCTGCTCAAGGCCATGGCCAAGTCCATGGGC
GTCAAGCTGGAGCTGGTCTCCACCAGCTACGACGGCATCATCCCGGCGCTGCTGACCGACAAGTTCGACATG
ATCGGCTCGGGCATGACCCTGACCCAGGAGCGCAACCTGCGCCTGAACTTCTCCGAGCCCTTCATCGTGGTC
GGCCAGACCCTGCTGGTGCGCAAGGAACTGGAAGGCAAGATCAAGTCCTACAAGGACCTGAACGATCCGCAG
TACAGCATCACCTCGAAGATCGGCACCACCGGTGAGATCGTTGCCCGCAAGCTGATCAGCAAGGCCAAGTAC
CACGGCTTCGACAACGAGCCGGAAGCGGTGATGGACGTGGTCAACGGCAAGGCTGACGCCTTCATCTACGAC
TCGCCCTACAACGTGGTGGCGGTGAGCAAGTTCGGCGCCGGCAAGCTGGTCTACCTCGACCAGCCGTTCACC
TACGAGCCGCTGGCGTTCGGCCTGAAGAAAGGCGACTACGACAGCATCAACTTCATCAACAACTTCCTCCAT
CAGATCCGCGAAGACGGCACCTATCAGCGCATCCACGACAAGTGGTTCAAGAACACCGAGTGGCTGAAGGAA
ATGGAATGA