ViewGene
Locus Name:
GeneID:
Location:

GeneID:2971
TrivialName: PA14_56960
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_56960
PAO1 Ortholog Locus:PA4382
Sequence Length:795
Protein Length:264
Start: 5076593
Stop: 5077387
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07770.1|AE004854_6 (AE004854) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 260/264 (98%), Positives = 261/264 (98%)
Sequence:
ATGACCCAGGCCGCCGTCCATTCCCCTTCCCGTCCATTCAACCCCTGGCTGTTCCTCGCCCTGCCGCTGGGC
CTGGCGGCACTGCTGCTGGCCTTCGAGCCGGTGACCCTCGACCTCGCCCTGGCCAACCTGATGTACGACCCG
GGCGCCGGCTTCATCGGCCGGCACAGCTGGTTCCTGGAGAACATCCTGCACGACCGGGTCAAGCAACTGGTG
ATCGCCATCAGCGTCCTCGGCCTGCTGGTCTCCATCGCCGGACTGTTCCACCGGCCATGGCGCGCACTGAGC
AAGCCGCTGGCCTATGTGTTCCTCGCCATGAGCCTTGCAGCCAGCATAGTCACTCCGCTCAAGGCGCTCACC
GCCGTGCAGTGCCCCTGGAGCCTGGCGCAGTTCGGCGGCGAGGAAACCTACAGTTCGCTGCTCAGCCCGCGG
CCGCCGACCGAGCACCCCGGACGCTGCTGGCCGGGCGGGCACGCATCGTCCGGATTCGTCCTGTTCGCACTG
TTCTTCGCCCTGCGCGACCGCAAGCCCCGGCTGGCGCGCTACGCCCTGGCCTTCGCCTTCGCCATGGGCTGC
CTGCTGTCGCTGTCGCGCATGCTGCAAGGTGCGCACTTCCTCTCGCACAACCTGTGGACGATGCTGTTCGAC
TGGCTGATCTGCCTCGGCCTGTACCGCCTGATGCTCTACCGACCGGAGAAGCGAGGACAGCGCAACGGCGGC
GCCGACGAAAACCGCGTTCAGGGAGACGGTTCGTCCGCTCCCAGCACGCCGAACTCGATGGGCACCTTCATG
TAG
Translation:
MTQAAVHSPSRPFNPWLFLALPLGLAALLLAFEPVTLDLALANLMYDPGAGFIGRHSWFLENILHDRVKQLV
IAISVLGLLVSIAGLFHRPWRALSKPLAYVFLAMSLAASIVTPLKALTAVQCPWSLAQFGGEETYSSLLSPR
PPTEHPGRCWPGGHASSGFVLFALFFALRDRKPRLARYALAFAFAMGCLLSLSRMLQGAHFLSHNLWTMLFD
WLICLGLYRLMLYRPEKRGQRNGGADENRVQGDGSSAPSTPNSMGTFM*
AnnotationID:2979GeneID:2971
AnnotatorUID: diggins
Modification Date/Time: 2005-05-02 09:09:07
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA4382
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3907
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO57825.1| (AE016871) PAP2 superfamily protein [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 247

 Score =  275 bits (704), Expect = 1e-73
 Identities = 133/246 (54%), Positives = 174/246 (70%), Gaps = 9/246 (3%)

>gb|AAN66525.1|AE016281_6 (AE016777) PAP2 family protein [Pseudomonas putida KT2440]
          Length = 242

 Score =  270 bits (691), Expect = 5e-72
 Identities = 131/221 (59%), Positives = 159/221 (71%), Gaps = 1/221 (0%)







 
Structural Features:
COG3907, PAP2 (acid phosphatase) superfamily protein
CD-Length = 249 residues,  95.6% aligned
Score =  326 bits (836), Expect = 5e-90
Identities = 105/243 (43%), Positives = 136/243 (55%), Gaps = 6/243 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:5945




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17138




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2971_cdd.html


    		




 
URL:

















    ReferenceID:23087




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2971
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4814
                           PA4382_tr
                           translation of PA4382
                           264
                           98.48
                           98.86
                           0
                           1366.0
     

     
     
137557
                           gb|AAG07770.1|AE004854_6
                           (AE004854) hypothetical protein PA4382 [Pseudomonas aeruginosa PAO1]
                           264
                           98.48
                           98.86
                           0
                           1366.0
     

     
     
137558
                           gb|AAO57825.1|
                           (AE016871) PAP2 superfamily protein [Pseudomonas syringae pv. tomato str. DC3000]
                           269
                           50.55
                           65.79
                           27
                           712.0
     

     
     
137559
                           gb|AAN66525.1|AE016281_6
                           (AE016777) PAP2 family protein [Pseudomonas putida KT2440]
                           275
                           50.18
                           61.45
                           44
                           687.0
     

     






      

          
GC ORFID: 45973How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4382Glimmer Score: 

          
Start: 4340269Stop: 4341063

          
Length: 795


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA4382 translation of PA4382Homolog Bit Score 530.0

          
Other Homologs:  psyr_15may02_Scaffold12_revised_gene1985 (ORF: BLASTX 278.0), t_PA4382 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCCAGGCCGCCGTCCATTCCCCTTCCCGTCCATTCAACCCCTGGCTGTTCCTCGCCCTGCCGCTGGGC 
CTGGCGGCACTGCTGCTGGCCTTCGAGCCGGTGACCCTCGACCTCGCCCTGGCCAACCTGATGTACGACCCG 
GGCGCCGGCTTCATCGGCCGGCACAGCTGGTTCCTGGAGAACATCCTGCACGACCGGGTCAAGCAACTGGTG 
ATCGCCATCAGCGTCCTCGGCCTGCTGGTCTCCATCGCCGGACTGTTCCACCGGCCATGGCGCGCACTGAGC 
AAGCCGCTGGCCTATGTGTTCCTCGCCATGAGCCTTGCAGCCAGCATAGTCACTCCGCTCAAGGCGCTCACC 
GCCGTGCAGTGCCCCTGGAGCCTGGCGCAGTTCGGCGGCGAGGAAACCTACAGTTCGCTGCTCAGCCCGCGG 
CCGCCGACCGAGCACCCCGGACGCTGCTGGCCGGGCGGGCACGCATCGTCCGGATTCGTCCTGTTCGCACTG 
TTCTTCGCCCTGCGCGACCGCAAGCCCCGGCTGGCGCGCTACGCCCTGGCCTTCGCCTTCGCCATGGGCTGC 
CTGCTGTCGCTGTCGCGCATGCTGCAAGGTGCGCACTTCCTCTCGCACAACCTGTGGACGATGCTGTTCGAC 
TGGCTGATCTGCCTCGGCCTGTACCGCCTGATGCTCTACCGACCGGAGAAGCGAGGACAGCGCAACGGCGGC 
GCCGACGAAAACCGCGTTCAGGGAGACGGTTCGTCCGCTCCCAGCACGCCGAACTCGATGGGCACCTTCATG 
TAG