ViewGene
Locus Name:
GeneID:
Location:

GeneID:2967
TrivialName: PA14_23670
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_23670
PAO1 Ortholog Locus:PA3127
Sequence Length:804
Protein Length:267
Start: 2058964
Stop: 2058161
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06515.1|AE004737_1 (AE004737) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 266/267 (99%), Positives = 266/267 (99%)
Sequence:
ATGGAACGCGCAATCCCGACCTTCCCCTGCCGCGATCTGGACAGCGCCAGCGCCTTCTACCAGTCCCTCGGC
TTCCACCTTGGCGCTCGCTATCCGACCTACGCCATCCTCCAGCGCGGCGCCCTGGAGCTGCACCTGTCGCTG
TTCGAAGCGCTCGAACCGAAGACCAATTGCAGCGCTGCCTACCTGCGCCTGGAGGACGCCCAGGCGCTGCAT
CGCCAGGCCGCGGCCCTCGGCCTGGGCGGCCAGGGGATTCCACGCATCACGGCCCTGGAAGACCAGCCCTGG
GGTATGCGCGAATTCGCCCTGGTCGATCCCGACGGCAACCTGCTGCGGGTCGGCCAGGAGCTCGATGCGACG
CCAGAGCAACACCGGGTTCGCCTGGCCAGCGCCGACGACGTCCCCGCTGTGGCCGCGCTCTGGCAAGCCAAT
GTCCGCGAAGCCGGGGAAACCCTGGATGCCGGCGACCAGCAGGCGATCCAGGCACTGCTCCTGGCCGCCTCG
CGCAACCGCTTGCTCTGGCTGGCGGAGGCCCAGCAGCATCCCCGCGGTTTCGTCCTCGCCCACCTGTGGCAG
ATCGAGGACGGTCAGGCACGGGTGGGAGAGATCGCAGAGCTCTACGTACTGCCGCAGGCCCGCCGCCAGGGC
CTGGCCCGGGAACTGGTGGGCAGTGCCGAGGAGGCCCTGCGCTCGCGCGGCGCCGGCCTGATCCGCGCGCAA
TCGGCCCTTGACGCGCCGCTGTCCAACCTGTTCTGGCAGGGCCTGGGCTGGGACGCCGACTACCTGACCTTC
ACTCGCTACTGA
Translation:
MERAIPTFPCRDLDSASAFYQSLGFHLGARYPTYAILQRGALELHLSLFEALEPKTNCSAAYLRLEDAQALH
RQAAALGLGGQGIPRITALEDQPWGMREFALVDPDGNLLRVGQELDATPEQHRVRLASADDVPAVAALWQAN
VREAGETLDAGDQQAIQALLLAASRNRLLWLAEAQQHPRGFVLAHLWQIEDGQARVGEIAELYVLPQARRQG
LARELVGSAEEALRSRGAGLIRAQSALDAPLSNLFWQGLGWDADYLTFTRY*
AnnotationID:2975GeneID:2967
AnnotatorUID: diggins
Modification Date/Time: 2005-04-13 08:08:22
Gene Name:
Confidence Code:3
GeneProduct:putative bleomycin resistance protein
Cell Localization:()
Synonyms:PA3127
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(3) Antibiotic resistance and susceptibility
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00583,pfam00903
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAM43330.1| (AE012535) bleomycin resistance protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
          Length = 155

 Score =  102 bits (254), Expect = 2e-21
 Identities = 54/120 (45%), Positives = 72/120 (60%), Gaps = 4/120 (3%)

>gb|AAM39068.1| (AE012076) bleomycin resistance protein [Xanthomonas axonopodis pv.
           citri str. 306]
          Length = 129

 Score = 99.8 bits (247), Expect = 1e-20
 Identities = 52/116 (44%), Positives = 70/116 (60%), Gaps = 4/116 (3%)








 
Structural Features:
pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family.
CD-Length = 82 residues,  98.8% aligned
Score = 48.7 bits (116), Expect = 8e-07
Identities = 21/84 (25%), Positives = 33/84 (39%), Gaps = 3/84 (3%)

pfam00903, Glyoxalase, Glyoxalase/Bleomycin resistance protein /
Dioxygenase superfamily.
CD-Length = 120 residues,  95.8% aligned
Score = 46.6 bits (110), Expect = 3e-06
Identities = 27/120 (22%), Positives = 38/120 (31%), Gaps = 18/120 (15%)






   
Genomic Context:






   
Comment:


















    ReferenceID:5937




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23079




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32394




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2967_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2967
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4806
                           PA3127_tr
                           translation of PA3127
                           267
                           99.62
                           99.62
                           0
                           1365.0
     

     
     
137320
                           gb|AAG06515.1|AE004737_1
                           (AE004737) hypothetical protein PA3127 [Pseudomonas aeruginosa PAO1]
                           267
                           99.62
                           99.62
                           0
                           1365.0
     

     
     
137321
                           gb|AAM43330.1|
                           (AE012535) bleomycin resistance protein [Xanthomonas campestris pv. campestris str. ATCC 33913]
                           304
                           17.76
                           23.68
                           186
                           255.0
     

     






      

          
GC ORFID: 45969How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3127Glimmer Score: 

          
Start: 2894967Stop: 2895770

          
Length: 804


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3127 translation of PA3127Homolog Bit Score 530.0

          
Other Homologs:  t_PA3127 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGAACGCGCAATCCCGACCTTCCCCTGCCGCGATCTGGACAGCGCCAGCGCCTTCTACCAGTCCCTCGGC 
TTCCACCTTGGCGCTCGCTATCCGACCTACGCCATCCTCCAGCGCGGCGCCCTGGAGCTGCACCTGTCGCTG 
TTCGAAGCGCTCGAACCGAAGACCAATTGCAGCGCTGCCTACCTGCGCCTGGAGGACGCCCAGGCGCTGCAT 
CGCCAGGCCGCGGCCCTCGGCCTGGGCGGCCAGGGGATTCCACGCATCACGGCCCTGGAAGACCAGCCCTGG 
GGTATGCGCGAATTCGCCCTGGTCGATCCCGACGGCAACCTGCTGCGGGTCGGCCAGGAGCTCGATGCGACG 
CCAGAGCAACACCGGGTTCGCCTGGCCAGCGCCGACGACGTCCCCGCTGTGGCCGCGCTCTGGCAAGCCAAT 
GTCCGCGAAGCCGGGGAAACCCTGGATGCCGGCGACCAGCAGGCGATCCAGGCACTGCTCCTGGCCGCCTCG 
CGCAACCGCTTGCTCTGGCTGGCGGAGGCCCAGCAGCATCCCCGCGGTTTCGTCCTCGCCCACCTGTGGCAG 
ATCGAGGACGGTCAGGCACGGGTGGGAGAGATCGCAGAGCTCTACGTACTGCCGCAGGCCCGCCGCCAGGGC 
CTGGCCCGGGAACTGGTGGGCAGTGCCGAGGAGGCCCTGCGCTCGCGCGGCGCCGGCCTGATCCGCGCGCAA 
TCGGCCCTTGACGCGCCGCTGTCCAACCTGTTCTGGCAGGGCCTGGGCTGGGACGCCGACTACCTGACCTTC 
ACTCGCTACTGA