ViewGene

Locus Name:
GeneID:
Location:

GeneID:2966
TrivialName: PA14_37210
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_37210
PAO1 Ortholog Locus:PA2116
Sequence Length:798
Protein Length:265
Start: 3315701
Stop: 3314904
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05504.1|AE004639_2 (AE004639) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 257/265 (96%), Positives = 261/265 (98%)
Sequence:
ATGCCCGAACCGACCTTCCACGAACTCGCGCAACTGCCGCCGCCGGTCCTGCGCCAACTGATCCGCCGCGGC
GACTACGCCGGCCATACCAGCGGCCTCGGCCAGCGCCACTTGCAGGCCAACCTGGTGATCCTGCAGAAATCC
TGGGCCGACGAGTTCCTTCGCTTCTGTGCCCTGAACCCCCGGGCCTGCCCGCTGCTCGACGTCAGCGAACCC
GGCTCGCCGCACTTCGCCCGGCTCGGCGCGGATATCGACGTGCGCAGCGACCTGCCGCGCTACAGGGTGCAT
CGGCGCGGCCAGGAGCCCGTCGAGGTGAACGACATCGGCGCGTTCTGGGAGGCGGATTTCGTCGCCTTCGCC
ATCGGCTGCTCGTTCTCCTTCGAACAGGCGTTGCTCGACGCCGGCATCGGCCTGCGCCACCTCGAGCTGGGC
CGCAACGTGGCGATGTACCGCACTGCCATCGCCACCCGGCCGAGCGGTCGCCTGGCCGGCCCCACGGTGGTA
TCGATGCGGCCGTTGAAGGCCGCCGAGGCGATCCGGGCGATCCAGATCACCAGCCGTTTCCCGATGACCCAT
GGCGCACCGCTGCACCTGGGCGATCCGGCGCTGATCGGCATCCGCGACCTGGCGCGGCCCGACTACGGCGAC
CCGGTGCCGCTCGCGGCGGACGAGATCCCGCTGTTCTGGGCCTGCGGGGTCACGCCCCAGGCGGTACTCGCC
GAAGCCCAGCCGGAGCTGTACATCAGCCACGCGCCGGGGCACATGCTGGTCAGCGACCGACTCTACGACGAA
CTCTGA
Translation:
MPEPTFHELAQLPPPVLRQLIRRGDYAGHTSGLGQRHLQANLVILQKSWADEFLRFCALNPRACPLLDVSEP
GSPHFARLGADIDVRSDLPRYRVHRRGQEPVEVNDIGAFWEADFVAFAIGCSFSFEQALLDAGIGLRHLELG
RNVAMYRTAIATRPSGRLAGPTVVSMRPLKAAEAIRAIQITSRFPMTHGAPLHLGDPALIGIRDLARPDYGD
PVPLAADEIPLFWACGVTPQAVLAEAQPELYISHAPGHMLVSDRLYDEL*
AnnotationID:2974GeneID:2966
AnnotatorUID: diggins
Modification Date/Time: 2005-03-03 09:09:23
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA2116
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
Genomic Context:
Comment:
ReferenceID:5935
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:23077
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:32601
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:2966_cdd.html
URL:
Homologs By Global Alignment
Gene ID:2966

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
4805 PA2116_tr translation of PA2116 265 96.98 98.49 0 1366.0
137304 gb|AAG05504.1|AE004639_2 (AE004639) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 265 96.98 98.49 0 1366.0
137306 emb|CAE33489.1| (BX640446) conserved hypothetical protein [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50] 278 56.47 68.34 14 790.0
137307 emb|CAE38321.1| (BX640432) conserved hypothetical protein [Bordetella parapertussis] 278 56.47 68.34 14 790.0
137305 emb|CAE42158.1| (BX640416) conserved hypothetical protein [Bordetella pertussis] [Bordetella pertussis Tohama I] 277 55.59 66.42 25 782.0
GC ORFID: 45968How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA2116Glimmer Score:
Start: 1638213Stop: 1639010
Length: 798
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA2116 translation of PA2116Homolog Bit Score 530.0
Other Homologs: psyr_15may02_Scaffold2_revised_gene3359 (ORF: BLASTX 242.0), t_PA2116 (ORF: GLIMMER)
GC ORF Sequence
ATGCCCGAACCGACCTTCCACGAACTCGCGCAACTGCCGCCGCCGGTCCTGCGCCAACTGATCCGCCGCGGC
GACTACGCCGGCCATACCAGCGGCCTCGGCCAGCGCCACTTGCAGGCCAACCTGGTGATCCTGCAGAAATCC
TGGGCCGACGAGTTCCTTCGCTTCTGTGCCCTGAACCCCCGGGCCTGCCCGCTGCTCGACGTCAGCGAACCC
GGCTCGCCGCACTTCGCCCGGCTCGGCGCGGATATCGACGTGCGCAGCGACCTGCCGCGCTACAGGGTGCAT
CGGCGCGGCCAGGAGCCCGTCGAGGTGAACGACATCGGCGCGTTCTGGGAGGCGGATTTCGTCGCCTTCGCC
ATCGGCTGCTCGTTCTCCTTCGAACAGGCGTTGCTCGACGCCGGCATCGGCCTGCGCCACCTCGAGCTGGGC
CGCAACGTGGCGATGTACCGCACTGCCATCGCCACCCGGCCGAGCGGTCGCCTGGCCGGCCCCACGGTGGTA
TCGATGCGGCCGTTGAAGGCCGCCGAGGCGATCCGGGCGATCCAGATCACCAGCCGTTTCCCGATGACCCAT
GGCGCACCGCTGCACCTGGGCGATCCGGCGCTGATCGGCATCCGCGACCTGGCGCGGCCCGACTACGGCGAC
CCGGTGCCGCTCGCGGCGGACGAGATCCCGCTGTTCTGGGCCTGCGGGGTCACGCCCCAGGCGGTACTCGCC
GAAGCCCAGCCGGAGCTGTACATCAGCCACGCGCCGGGGCACATGCTGGTCAGCGACCGACTCTACGACGAA
CTCTGA