ViewGene
Locus Name:
GeneID:
Location:

GeneID:2965
TrivialName: PA14_41070
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_41070
PAO1 Ortholog Locus:PA1814
Sequence Length:762
Protein Length:253
Start: 3662483
Stop: 3661722
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05203.1|AE004608_2 (AE004608) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 253/253 (100%), Positives = 253/253 (100%)
Sequence:
ATGAACGAACCGCAAGCCTTCGCCCAGACCGATGCCGAGTGGCTGGCATCGATCAACCGGGCGCGCGACTGG
TTCCAGGGCCCGCTGGGCAGCCTGATGCTGGCCGAGGAGCGACGCCTGTTGTGCGACGAGCTGACCCGTTAC
TTCGGTGGCTACCTGGTGCACTACGGGCCGCATGCCGAACTGCCGCCGAGCACCGGGCAGATTCAGCGCGGC
GTGCGCCTGGGGCCGCCGCTGCCGGGCGTGGACATCGCCTGCGAAGAGGGCGCCTGGCCGCTCAGCGAACAT
GCCGCGGACGTGGTCCTGCTGCAACACGGCCTGGATTTCTGCCTGTCGCCTCACCGTCTCCTGCGCGAAGCC
GCGCGTACCGTTCGTCCGGGCGGCCACCTGCTGCTGATCGGCATCAACCCATGGAGCCTGTGGGGCATCCGT
CATTATTTCGCCGGGGATGCCTTGCGCCAGGCCCGCTGCATTCCTCCGTCGCGGGCCTGCGATTGGCTCAAC
CTGCTGGGCTTCGCGCTGGAGAAACGGCGCTTcggGTGCTATCGTCCGCCGCTTGCGTCGGCAGCCTGGCAA
TCGCGCCTGGCTCGCCTGGAGCGCTGGGGCGACGCCTGGCAGTCTTCGGGCGCCGGCTTCTATCTATTGGTG
GCACGCAAGCTGGTCGTGGGGTTGCGCCCGTTGCGCCAGAGCAAGCGCGAACCGCGCGGTCAGCTGGTGCCC
ATGCCGGTGGCGAAAGTCAGCCGGCGAGATTCCGAAATTTAG
Translation:
MNEPQAFAQTDAEWLASINRARDWFQGPLGSLMLAEERRLLCDELTRYFGGYLVHYGPHAELPPSTGQIQRG
VRLGPPLPGVDIACEEGAWPLSEHAADVVLLQHGLDFCLSPHRLLREAARTVRPGGHLLLIGINPWSLWGIR
HYFAGDALRQARCIPPSRACDWLNLLGFALEKRRFGCYRPPLASAAWQSRLARLERWGDAWQSSGAGFYLLV
ARKLVVGLRPLRQSKREPRGQLVPMPVAKVSRRDSEI*
AnnotationID:2973GeneID:2965
AnnotatorUID: diggins
Modification Date/Time: 2005-03-01 18:06:30
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA1814
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:5933




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23075




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2965
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4804
                           PA1814_tr
                           translation of PA1814
                           253
                           99.99
                           99.99
                           0
                           1365.0
     

     
     
137301
                           gb|AAG05203.1|AE004608_2
                           (AE004608) hypothetical protein PA1814 [Pseudomonas aeruginosa PAO1]
                           253
                           99.99
                           99.99
                           0
                           1365.0
     

     
     
137302
                           gb|AAO57182.1|
                           (AE016869) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           254
                           74.01
                           82.28
                           2
                           1000.0
     

     
     
137303
                           gb|AAN69725.1|AE016608_11
                           (AE016789) conserved hypothetical protein [Pseudomonas putida KT2440]
                           266
                           67.66
                           76.69
                           13
                           962.0
     

     






      

          
GC ORFID: 45967How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1814Glimmer Score: 

          
Start: 1291427Stop: 1292188

          
Length: 762


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA1814 translation of PA1814Homolog Bit Score 530.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene786 (ORF: BLASTX 393.0), t_PA1814 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACGAACCGCAAGCCTTCGCCCAGACCGATGCCGAGTGGCTGGCATCGATCAACCGGGCGCGCGACTGG 
TTCCAGGGCCCGCTGGGCAGCCTGATGCTGGCCGAGGAGCGACGCCTGTTGTGCGACGAGCTGACCCGTTAC 
TTCGGTGGCTACCTGGTGCACTACGGGCCGCATGCCGAACTGCCGCCGAGCACCGGGCAGATTCAGCGCGGC 
GTGCGCCTGGGGCCGCCGCTGCCGGGCGTGGACATCGCCTGCGAAGAGGGCGCCTGGCCGCTCAGCGAACAT 
GCCGCGGACGTGGTCCTGCTGCAACACGGCCTGGATTTCTGCCTGTCGCCTCACCGTCTCCTGCGCGAAGCC 
GCGCGTACCGTTCGTCCGGGCGGCCACCTGCTGCTGATCGGCATCAACCCATGGAGCCTGTGGGGCATCCGT 
CATTATTTCGCCGGGGATGCCTTGCGCCAGGCCCGCTGCATTCCTCCGTCGCGGGCCTGCGATTGGCTCAAC 
CTGCTGGGCTTCGCGCTGGAGAAACGGCGCTTcggGTGCTATCGTCCGCCGCTTGCGTCGGCAGCCTGGCAA 
TCGCGCCTGGCTCGCCTGGAGCGCTGGGGCGACGCCTGGCAGTCTTCGGGCGCCGGCTTCTATCTATTGGTG 
GCACGCAAGCTGGTCGTGGGGTTGCGCCCGTTGCGCCAGAGCAAGCGCGAACCGCGCGGTCAGCTGGTGCCC 
ATGCCGGTGGCGAAAGTCAGCCGGCGAGATTCCGAAATTTAG