ViewGene
Locus Name:
GeneID:
Location:

GeneID:2963
TrivialName: PA14_72760
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_72760
PAO1 Ortholog Locus:PA5514
Sequence Length:789
Protein Length:262
Start: 6480480
Stop: 6481268
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08899.1|AE004964_2 (AE004964) probable beta-lactamase [Pseudomonas aeruginosa PAO1]
Identities = 260/262 (99%), Positives = 261/262 (99%)
Sequence:
ATGCGCCCTCTCCTCTTCAGCGCCCTTCTCCTGCTCTCCGGGCATGCCCAGGCCAGCGAATGGAACGACAGC
CGGGCCGTGGACAAGCTATTCGGAGCGGCCGGTGTGAAAGGCACCTTCGTCCTTTACGATGTGCAGCGGCAG
CGCTATGTCGGCCATGACCGGGAGCGCGCGGAAACCCGCTTCGTTCCCGCTTCCACCTACAAGGTGGCGAAC
AGCCTGATCGGCTTATCCACAGGGGCGGTTAGATCCGCCGACGAGGTTCTTCCCTATGGCGGCAAACCCCAG
CGCTTCAAGGCCTGGGAGCACGACATGAGCCTGCGCGACGCGATCAAGGCATCGAACGTACCGGTCTACCAG
GAACTGGCGCGGCGCATCGGCCTGGAGCGGATGCGCGCCAATGTCTCGCGCCTGGGTTACGGCAACGCGGAA
ATCGGCCAGGTTGTGGATAACTTCTGGTTGGTGGGACCGCTGAAGATCAGCGCGATGGAGCAGACCCGCTTT
CTGCTCCGACTGGCGCAGGGAGAATTGCCATTCCCCGCCCCGGTGCAGTCCACCGTGCGCGCCATGACCCTG
CTGGAAAGCGGCCCGGGCTGGGAGCTGCACGGCAAGACCGGCTGGTGCTTCGACTGCACGCCGGAACTCGGC
TGGTGGGTGGGCTGGGTGAAGCGCAACGAGCGGCTCTACGGCTTCGCCCTGAACATCGACATGCCCGGCGGC
GAGGCCGACATCGGCAAGCGCGTCGAACTGGGCAAGGCCAGTCTCAAGGCTCTCGGGATACTGCCCTGA
Translation:
MRPLLFSALLLLSGHAQASEWNDSRAVDKLFGAAGVKGTFVLYDVQRQRYVGHDRERAETRFVPASTYKVAN
SLIGLSTGAVRSADEVLPYGGKPQRFKAWEHDMSLRDAIKASNVPVYQELARRIGLERMRANVSRLGYGNAE
IGQVVDNFWLVGPLKISAMEQTRFLLRLAQGELPFPAPVQSTVRAMTLLESGPGWELHGKTGWCFDCTPELG
WWVGWVKRNERLYGFALNIDMPGGEADIGKRVELGKASLKALGILP*
AnnotationID:2971GeneID:2963
AnnotatorUID: diggins
Modification Date/Time: 2005-03-21 09:09:04
Gene Name:
Confidence Code:3
GeneProduct:putative beta-lactamase
Cell Localization:()
Synonyms:PA5514
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(1) Adaptation, protection
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2602
Secondary Functional Category(ies):antibiotic resistance and susceptibility
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAB69042.1| (AJ132105) beta-lactamase [Acinetobacter baumannii]
          Length = 273

 Score =  202 bits (515), Expect = 1e-51
 Identities = 105/239 (43%), Positives = 152/239 (63%), Gaps = 3/239 (1%)








 
Structural Features:
COG2602, COG2602, Beta-lactamase class D [Defense mechanisms]
CD-Length = 254 residues,  99.6% aligned
Score =  314 bits (807), Expect = 5e-87
Identities = 125/257 (48%), Positives = 156/257 (60%), Gaps = 5/257 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:5929




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23071




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33304




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2963_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2963
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4802
                           PA5514_tr
                           translation of PA5514
                           262
                           99.23
                           99.61
                           0
                           1367.0
     

     
     
137264
                           gb|AAG08899.1|AE004964_2
                           (AE004964) probable beta-lactamase [Pseudomonas aeruginosa PAO1]
                           262
                           99.23
                           99.61
                           0
                           1367.0
     

     
     
137266
                           gb|AAP69916.1|
                           (AY227054) class D beta-lactamase [Fusobacterium nucleatum]
                           264
                           39.01
                           60.60
                           12
                           515.0
     

     
     
137267
                           gb|AAG35609.2|AF201828_1
                           (AF201828) beta-lactamase OXA-27 [Acinetobacter baumannii]
                           286
                           38.81
                           55.59
                           37
                           511.0
     

     
     
137265
                           emb|CAB69042.1|
                           (AJ132105) beta-lactamase [Acinetobacter baumannii]
                           284
                           38.73
                           55.63
                           33
                           515.0
     

     






      

          
GC ORFID: 45965How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5514Glimmer Score: 

          
Start: 5744169Stop: 5744957

          
Length: 789


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5514 translation of PA5514Homolog Bit Score 531.0

          
Other Homologs:  t_PA5514 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGCCCTCTCCTCTTCAGCGCCCTTCTCCTGCTCTCCGGGCATGCCCAGGCCAGCGAATGGAACGACAGC 
CGGGCCGTGGACAAGCTATTCGGAGCGGCCGGTGTGAAAGGCACCTTCGTCCTTTACGATGTGCAGCGGCAG 
CGCTATGTCGGCCATGACCGGGAGCGCGCGGAAACCCGCTTCGTTCCCGCTTCCACCTACAAGGTGGCGAAC 
AGCCTGATCGGCTTATCCACAGGGGCGGTTAGATCCGCCGACGAGGTTCTTCCCTATGGCGGCAAACCCCAG 
CGCTTCAAGGCCTGGGAGCACGACATGAGCCTGCGCGACGCGATCAAGGCATCGAACGTACCGGTCTACCAG 
GAACTGGCGCGGCGCATCGGCCTGGAGCGGATGCGCGCCAATGTCTCGCGCCTGGGTTACGGCAACGCGGAA 
ATCGGCCAGGTTGTGGATAACTTCTGGTTGGTGGGACCGCTGAAGATCAGCGCGATGGAGCAGACCCGCTTT 
CTGCTCCGACTGGCGCAGGGAGAATTGCCATTCCCCGCCCCGGTGCAGTCCACCGTGCGCGCCATGACCCTG 
CTGGAAAGCGGCCCGGGCTGGGAGCTGCACGGCAAGACCGGCTGGTGCTTCGACTGCACGCCGGAACTCGGC 
TGGTGGGTGGGCTGGGTGAAGCGCAACGAGCGGCTCTACGGCTTCGCCCTGAACATCGACATGCCCGGCGGC 
GAGGCCGACATCGGCAAGCGCGTCGAACTGGGCAAGGCCAGTCTCAAGGCTCTCGGGATACTGCCCTGA