ViewGene
Locus Name:
GeneID:
Location:

GeneID:2962
TrivialName: PA14_58230
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_58230
PAO1 Ortholog Locus:PA4487
Sequence Length:792
Protein Length:263
Start: 5182332
Stop: 5181541
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07875.1|AE004862_9 (AE004862) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 261/263 (99%), Positives = 263/263 (100%)
Sequence:
ATGAACCGAATGTCCCTTGCCGCCCTGCTCAGTTGCCTGCCCCTCGTCGCCTGGGCGGACAACCCCGTGAAA
CTGGATACGCCGGTCTCCGGCTGGCGTGCCGGCGACGGTTCCGCCGCCAATTACCGGCAGGTGGTGAACTAC
CCGGCGTCCTCGGTCAACGTTGCCGCCGACCAAGCGACCACCGCGCGCATTCGCGGCGCGATCGAGAGCCAG
CCCAAGGAGCGTCCGGCGACGCTGGTGGTGAACGGTGTGAGCATGCCACTGAAGGTGGACGCCGATGGCAGC
TTCGACCGCCCGTTCGCCTTCCCGTCCGGCAGCAACAGCGTCGAGGTGCGCAACGCCGCCGGGCAGTCGCGA
CGGGTCCAGTTCTATCACGGTGGCGGCGGCGGGGAAGTGCCGGCCAAGCTGCGCGTGCTGCTGTCCTGGGAC
AGCGACAACACCGACCTCGACCTGCACCTGGTGACCCCGGACGGCGACCATGTCTGGTATGGCAATCGTTCG
CTGGCCAACGGCGCGACCCTGGATGTCGACGTCACCACCGGCTACGGCCCGGAAATCATCGCCACGCCGACG
CCACAGAAGGGGCCCTACCTGGTCTACGTCAACTACTTCGGCGGTGGCTACGGCAGCAGCGAGGATGGCGCC
GAACAGGCCGCCCAGAACCTGACCACGGCGCGCATCACCCTGGTCACCGAAGAGGGCACGCCGAACGAGAAA
CAGGAAACCTTCCTGGTGCCGATGCGCAAGCCTGGCGAACTGACGCTGGTGAAGCGCTTCAGTTATCCGTAG
Translation:
MNRMSLAALLSCLPLVAWADNPVKLDTPVSGWRAGDGSAANYRQVVNYPASSVNVAADQATTARIRGAIESQ
PKERPATLVVNGVSMPLKVDADGSFDRPFAFPSGSNSVEVRNAAGQSRRVQFYHGGGGGEVPAKLRVLLSWD
SDNTDLDLHLVTPDGDHVWYGNRSLANGATLDVDVTTGYGPEIIATPTPQKGPYLVYVNYFGGGYGSSEDGA
EQAAQNLTTARITLVTEEGTPNEKQETFLVPMRKPGELTLVKRFSYP*
AnnotationID:2970GeneID:2962
AnnotatorUID: diggins
Modification Date/Time: 2005-05-04 05:05:39
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA4487
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN81222.1|AE016763_181 (AE016763) Hypothetical protein yfaP precursor [Escherichia coli
           CFT073]
          Length = 258

 Score =  273 bits (698), Expect = 7e-73
 Identities = 140/268 (52%), Positives = 186/268 (69%), Gaps = 16/268 (5%)

>emb|CAD16736.1| (AL646073) PROBABLE SIGNAL PEPTIDE PROTEIN [Ralstonia solanacearum]
          Length = 282

 Score =  257 bits (657), Expect = 4e-68
 Identities = 132/257 (51%), Positives = 170/257 (66%), Gaps = 28/257 (10%)






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:5927




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23069




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31530




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2962_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2962
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4800
                           PA4487_tr
                           translation of PA4487
                           263
                           99.23
                           99.99
                           0
                           1368.0
     

     
     
137254
                           gb|AAG07875.1|AE004862_9
                           (AE004862) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           263
                           99.23
                           99.99
                           0
                           1368.0
     

     
     
137259
                           gb|AAC75285.1|
                           (AE000312) orf, hypothetical protein [Escherichia coli K12]
                           269
                           52.41
                           69.14
                           17
                           713.0
     

     
     
137258
                           dbj|BAB36531.1|
                           (AP002560) hypothetical protein [Escherichia coli O157:H7]
                           269
                           52.41
                           69.14
                           17
                           714.0
     

     
     
137257
                           gb|AAG57354.1|AE005454_2
                           (AE005454) orf, hypothetical protein [Escherichia coli O157:H7 EDL933]
                           269
                           52.41
                           69.14
                           17
                           714.0
     

     






      

          
GC ORFID: 45964How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4487Glimmer Score: 

          
Start: 4446011Stop: 4445220

          
Length: 792


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA4487 translation of PA4487Homolog Bit Score 531.0

          
Other Homologs:  t_PA4492 (ORF: BLASTX 167.0), t_PA4487 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACCGAATGTCCCTTGCCGCCCTGCTCAGTTGCCTGCCCCTCGTCGCCTGGGCGGACAACCCCGTGAAA 
CTGGATACGCCGGTCTCCGGCTGGCGTGCCGGCGACGGTTCCGCCGCCAATTACCGGCAGGTGGTGAACTAC 
CCGGCGTCCTCGGTCAACGTTGCCGCCGACCAAGCGACCACCGCGCGCATTCGCGGCGCGATCGAGAGCCAG 
CCCAAGGAGCGTCCGGCGACGCTGGTGGTGAACGGTGTGAGCATGCCACTGAAGGTGGACGCCGATGGCAGC 
TTCGACCGCCCGTTCGCCTTCCCGTCCGGCAGCAACAGCGTCGAGGTGCGCAACGCCGCCGGGCAGTCGCGA 
CGGGTCCAGTTCTATCACGGTGGCGGCGGCGGGGAAGTGCCGGCCAAGCTGCGCGTGCTGCTGTCCTGGGAC 
AGCGACAACACCGACCTCGACCTGCACCTGGTGACCCCGGACGGCGACCATGTCTGGTATGGCAATCGTTCG 
CTGGCCAACGGCGCGACCCTGGATGTCGACGTCACCACCGGCTACGGCCCGGAAATCATCGCCACGCCGACG 
CCACAGAAGGGGCCCTACCTGGTCTACGTCAACTACTTCGGCGGTGGCTACGGCAGCAGCGAGGATGGCGCC 
GAACAGGCCGCCCAGAACCTGACCACGGCGCGCATCACCCTGGTCACCGAAGAGGGCACGCCGAACGAGAAA 
CAGGAAACCTTCCTGGTGCCGATGCGCAAGCCTGGCGAACTGACGCTGGTGAAGCGCTTCAGTTATCCGTAG