ViewGene
Locus Name:
GeneID:
Location:

GeneID:2961
TrivialName: PA14_56100
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_56100
PAO1 Ortholog Locus:PA4318
Sequence Length:798
Protein Length:265
Start: 5010149
Stop: 5010946
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07706.1|AE004848_5 (AE004848) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 263/265 (99%), Positives = 264/265 (99%)
Sequence:
ATGACGCCACGCTGGCTAGCATCTGACTTTCCCCGACACGGCCCCCCGATGCCACCGAACGCAGCCGCCCGC
CTCGTCGCGCCCGCCCCCCGGCCAGGCGCCGAGGTCCTCGACACCCACTACCACGTGGAAACGCCGGAAGGC
ATCGACCTGCTCCTGCGTCCCGCCGGCGTCGTCCCCCGGGCCCTGGCCTATACCATCGACCTCTGCATCCGC
GGCCTGATCATGCTGGTGCTGATGCTCGGCCTGGCGTTCCTCGGCAAGCTCGGCGCCGGCCTCGGCCTGCTG
CTGACCTTCGTCATGACCTGGTGGTACATGGTCCTCTTCGAGGTGCTCAACCAGGGCCGCTCGCCCGGCAAG
CAGATGATGGGACTGCGCGTCGTCCACGACGACGGCACTCCGGTGGGCTGGGCCGCGTCGCTGCTGCGCAAC
CTGCTGCGCTTCGCCGACATCCTGCCCTTCGGCTACGCCCTCGGTCTGCTCTGTTGCCTGAACCATCCGGCC
TTCAAGCGCCTGGGCGACATCGCCGCCGGCACCCTGGTGGTCTACCGCGAACCCGAACTGAGCCGGCCCAGC
CTGCCTGACGTCGAGCCGCAACTGCCGCCCTTCCCCATGAGCCTGGAAGAACAGCGCGCTTTCCTCGGCTTC
GCCGAACGCGGCGCGGCGCTTTCCTCGGCACGCCGCGAGGAACTGGCGGGCATTCTCGCCGAACCGCTGGGC
GTCGAGCCGGTACGCGCCCAGGCCGAGATCAACGGCATCGCCCGCGGCTTTCTCGGCCTGCGCCAGGAGAGC
GCATGA
Translation:
MTPRWLASDFPRHGPPMPPNAAARLVAPAPRPGAEVLDTHYHVETPEGIDLLLRPAGVVPRALAYTIDLCIR
GLIMLVLMLGLAFLGKLGAGLGLLLTFVMTWWYMVLFEVLNQGRSPGKQMMGLRVVHDDGTPVGWAASLLRN
LLRFADILPFGYALGLLCCLNHPAFKRLGDIAAGTLVVYREPELSRPSLPDVEPQLPPFPMSLEEQRAFLGF
AERGAALSSARREELAGILAEPLGVEPVRAQAEINGIARGFLGLRQESA*
AnnotationID:2969GeneID:2961
AnnotatorUID: diggins
Modification Date/Time: 2005-04-04 13:01:42
Gene Name:
Confidence Code:4
GeneProduct:putative membrane protein
Cell Localization:()
Synonyms:PA4318
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:5925




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23067




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36682




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2961_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2961
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4799
                           PA4318_tr
                           translation of PA4318
                           265
                           99.24
                           99.62
                           0
                           1369.0
     

     
     
137252
                           gb|AAG07706.1|AE004848_5
                           (AE004848) hypothetical protein PA4318 [Pseudomonas aeruginosa PAO1]
                           265
                           99.24
                           99.62
                           0
                           1369.0
     

     
     
137253
                           gb|AAO57768.1|
                           (AE016871) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           265
                           54.71
                           68.30
                           30
                           741.0
     

     






      

          
GC ORFID: 45963How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4318Glimmer Score: 

          
Start: 4273825Stop: 4274622

          
Length: 798


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4318 translation of PA4318Homolog Bit Score 531.0

          
Other Homologs:  psyr_15may02_Scaffold12_revised_gene1946 (ORF: BLASTX 286.0), t_PA4318 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACGCCACGCTGGCTAGCATCTGACTTTCCCCGACACGGCCCCCCGATGCCACCGAACGCAGCCGCCCGC 
CTCGTCGCGCCCGCCCCCCGGCCAGGCGCCGAGGTCCTCGACACCCACTACCACGTGGAAACGCCGGAAGGC 
ATCGACCTGCTCCTGCGTCCCGCCGGCGTCGTCCCCCGGGCCCTGGCCTATACCATCGACCTCTGCATCCGC 
GGCCTGATCATGCTGGTGCTGATGCTCGGCCTGGCGTTCCTCGGCAAGCTCGGCGCCGGCCTCGGCCTGCTG 
CTGACCTTCGTCATGACCTGGTGGTACATGGTCCTCTTCGAGGTGCTCAACCAGGGCCGCTCGCCCGGCAAG 
CAGATGATGGGACTGCGCGTCGTCCACGACGACGGCACTCCGGTGGGCTGGGCCGCGTCGCTGCTGCGCAAC 
CTGCTGCGCTTCGCCGACATCCTGCCCTTCGGCTACGCCCTCGGTCTGCTCTGTTGCCTGAACCATCCGGCC 
TTCAAGCGCCTGGGCGACATCGCCGCCGGCACCCTGGTGGTCTACCGCGAACCCGAACTGAGCCGGCCCAGC 
CTGCCTGACGTCGAGCCGCAACTGCCGCCCTTCCCCATGAGCCTGGAAGAACAGCGCGCTTTCCTCGGCTTC 
GCCGAACGCGGCGCGGCGCTTTCCTCGGCACGCCGCGAGGAACTGGCGGGCATTCTCGCCGAACCGCTGGGC 
GTCGAGCCGGTACGCGCCCAGGCCGAGATCAACGGCATCGCCCGCGGCTTTCTCGGCCTGCGCCAGGAGAGC 
GCATGA