ViewGene
Locus Name:
GeneID:
Location:

GeneID:2960
TrivialName: PA14_12960
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_12960
PAO1 Ortholog Locus:PA3936
Sequence Length:819
Protein Length:272
Start: 1109316
Stop: 1110134
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07323.1|AE004811_6 (AE004811) probable permease of ABC taurine transporter [Pseudomonas aeruginosa PAO1]
Identities = 272/272 (100%), Positives = 272/272 (100%)
Sequence:
ATGCCCACTGATACCCTCGGACTCGCCGTCGCCAATCCTGTCCCGCGCAAGCGGCGCCTGCCCGGCGACCGT
CGGCGCTGGGCCGCCGGTGCCAGCGTGCTGGCCCTGGCCCTGCTGTGGTGGGCGGCGACCCGTTTCGGCTGG
GTCGACGTGCTGTTCCTGCCGGCGCCCGAACAGCTCTTCGAAGCCCTGCAACGGCTATGGCAGGAGGGCTAC
CTCGATGCCAGCCTGCTGCAACACGTCGGCACCAGTCTGCTGCGGGTGCTCCTGGCGCTCGGCGCGGCGGTG
CTGACGGCGATCCCGCTGGGCGTGCTGATGGGCCTCAACCCCTTGGCCGGAGCGGCCCTCGATCCGCTGGTG
GAGTTCTACCGGCCGATCCCGCCGTTGGCCTACCTGCCGTTGATCGTCATCTGGTTCGGCATCGGCGAGCTG
AGCAAGGTGCTGCTGATCTACCTGGCGCTGTTCGCGCCGCTGCTGATCGCTACCGCCGCCGGCGTGCGTCGC
GTCGACCGATCGCGGGTGCAGGCGGTGCGCTGCCTGGGGGCCAGCCGCTGGCAGGTGGTGCGCTACGTGATC
CTGCCGAGCGCCTTGCCGGAGGTCCTCACCGGCCTGCGCATCGCCCTCGGCGTCGGCTGGTCGACCCTGGTC
GCCGCCGAGCTGATCGCGGCCAACCGCGGCCTCGGCTTCATGGTCCAGTCCGCCGCGCAATTCCTCGCCACC
GACGTGGTGGTGGTCGGCATCCTGCTGATCGCCGCCATCGCCCTGGCCTTCGAACTGGGGCTGCGCTGGGTC
CAGCGGCGCTTCGCCGCCTGGGGTTGA
Translation:
MPTDTLGLAVANPVPRKRRLPGDRRRWAAGASVLALALLWWAATRFGWVDVLFLPAPEQLFEALQRLWQEGY
LDASLLQHVGTSLLRVLLALGAAVLTAIPLGVLMGLNPLAGAALDPLVEFYRPIPPLAYLPLIVIWFGIGEL
SKVLLIYLALFAPLLIATAAGVRRVDRSRVQAVRCLGASRWQVVRYVILPSALPEVLTGLRIALGVGWSTLV
AAELIAANRGLGFMVQSAAQFLATDVVVVGILLIAAIALAFELGLRWVQRRFAAWG*
AnnotationID:2968GeneID:2960
AnnotatorUID: urbach
Modification Date/Time: 2004-04-14 15:03:14
Gene Name:
Confidence Code:3
GeneProduct:probable permease of ABC taurine transporter
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0600,COG1174,COG4176
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
72% similar to E.coli TauC 






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:5923




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23065




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2960
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4798
                           PA3936_tr
                           translation of PA3936
                           272
                           99.99
                           99.99
                           0
                           1367.0
     

     
     
137233
                           gb|AAG07323.1|AE004811_6
                           (AE004811) probable permease of ABC taurine transporter [Pseudomonas aeruginosa PAO1]
                           272
                           99.99
                           99.99
                           0
                           1367.0
     

     
     
137234
                           gb|AAO58747.1|
                           (AE016875) taurine ABC transporter, permease protein [Pseudomonas syringae pv. tomato str. DC3000]
                           287
                           58.88
                           71.77
                           17
                           833.0
     

     
     
137235
                           dbj|BAC00966.1|
                           (AB086390) ABC-type transporter membrane permease component [Pseudomonas putida]
                           282
                           57.80
                           71.63
                           13
                           801.0
     

     
     
137236
                           gb|AAN65863.1|AE016214_8
                           (AE016774) taurine ABC transporter, permease protein [Pseudomonas putida KT2440]
                           283
                           57.59
                           71.02
                           15
                           791.0
     

     






      

          
GC ORFID: 45962How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3936Glimmer Score: 

          
Start: 3844622Stop: 3843804

          
Length: 819


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3936 translation of PA3936Homolog Bit Score 531.0

          
Other Homologs:  t_PA3936 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCCACTGATACCCTCGGACTCGCCGTCGCCAATCCTGTCCCGCGCAAGCGGCGCCTGCCCGGCGACCGT 
CGGCGCTGGGCCGCCGGTGCCAGCGTGCTGGCCCTGGCCCTGCTGTGGTGGGCGGCGACCCGTTTCGGCTGG 
GTCGACGTGCTGTTCCTGCCGGCGCCCGAACAGCTCTTCGAAGCCCTGCAACGGCTATGGCAGGAGGGCTAC 
CTCGATGCCAGCCTGCTGCAACACGTCGGCACCAGTCTGCTGCGGGTGCTCCTGGCGCTCGGCGCGGCGGTG 
CTGACGGCGATCCCGCTGGGCGTGCTGATGGGCCTCAACCCCTTGGCCGGAGCGGCCCTCGATCCGCTGGTG 
GAGTTCTACCGGCCGATCCCGCCGTTGGCCTACCTGCCGTTGATCGTCATCTGGTTCGGCATCGGCGAGCTG 
AGCAAGGTGCTGCTGATCTACCTGGCGCTGTTCGCGCCGCTGCTGATCGCTACCGCCGCCGGCGTGCGTCGC 
GTCGACCGATCGCGGGTGCAGGCGGTGCGCTGCCTGGGGGCCAGCCGCTGGCAGGTGGTGCGCTACGTGATC 
CTGCCGAGCGCCTTGCCGGAGGTCCTCACCGGCCTGCGCATCGCCCTCGGCGTCGGCTGGTCGACCCTGGTC 
GCCGCCGAGCTGATCGCGGCCAACCGCGGCCTCGGCTTCATGGTCCAGTCCGCCGCGCAATTCCTCGCCACC 
GACGTGGTGGTGGTCGGCATCCTGCTGATCGCCGCCATCGCCCTGGCCTTCGAACTGGGGCTGCGCTGGGTC 
CAGCGGCGCTTCGCCGCCTGGGGTTGA