ViewGene
Locus Name:
GeneID:
Location:

GeneID:296
TrivialName: PA14_30040
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_30040
PAO1 Ortholog Locus:PA2635
Sequence Length:2019
Protein Length:672
Start: 2602378
Stop: 2600360
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06023.1|AE004692_2 (AE004692) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 670/672 (99%), Positives = 670/672 (99%)
Sequence:
GTGAGCCTGGAGAAAAAAGATGCCATCCTGTTCGGTGATGGCGACGAGTTGCCCAGCAACCATTCGAACAAC
CCACACATGAACGACCTGATCGCCGGCCTCGGCCGCCGCCAGGTCCTGGCCGGCGGCGCGGCGCTCGGCGCC
CTCGCCTTCCTCGGCGTCGCGCTCCCCGCCAGCGCCGCTCCCGCCGAAGCGCAGGCGCCCGCCGCGGAAGGC
CTGCGCGGCTTGCCTTTCAAACGCCGCAACCGCTTACCCTTCGAAGCCATCGCCAGCGGCCGCGCCGATACC
ATCCGGGTGCCCGCCGGCTACAAGGCGACGCCCTTCATACCCTGGGGCACCCCGATCAGCGGCAGTTATCCG
GGCTTCCTCGACGACGCCAGCAACAGCGCCCAGGACCAGGCCGAACAGATCGGCATGCACCACGACGGCATG
CACTTCTTCCCGATCGACGCGCAGTTCGGCTTCGGCGGCGGACACATCAGCAACCATGGCCTGCTGGTGCTC
AACCATGAATACATCGACGCGCCGCTGCTGCACACCAATGGCCCGACCGTGGTCGATGGCAAGCGCACCGTC
GCCGATGAAGTGCGCAAGGAAATCAACGCCCATGGCGTTTCCGTCGTGGAGATCCGTCGCAACGTGCGTGGC
GAGTGGAATGTCGTGCCGTCGCAACGAAATCGCCGGATCACCGCCGCCACGCCGATGCGTATCGCCGGCCCG
GCGCGCGGCCACGAACTGCTGCGCACCCGCCACAGTCCGGACGGCACCCGCACCCGCGGCACCCATAACAAC
TGTTCCAACGGTTTCACCCCCTGGGGCACGTACCTCACCTGCGAGGAGAACTGGGTCGGCTATTTCTCCACC
CAGGACAGCGAACTGCCGCGCGAACTGACCCGCTACGGCATTCGCAATACCAGCCGTTTCGGCTGGGAGACC
CTGGCGGGCGACGAGTTCGAGCGCTTCGACGCCACCCGCAAGGGCAAACAGGCTCAGGACGACTACCGCAAC
GAACCGAACAACTTCGGCTGGATCGTCGAGATCGACCCGTTCGACCCGCAATCGGTACCGGTCAAGCGCACC
GCTCTCGGCCGCTTCGCCCACGAAGGCCTGGTCTTCGCCCCGGTCAAGCCGGGCCGCCAGGTAGTCTGCTAC
TCTGGCGACGACTCGCAGAACGAGTACATCTACAAGTACGTCAGCCGCGACAAGTTCCGTCCGGGTCGCAGC
AACGCTCGCCTGCTCGACGAAGGCACCCTCTACGTCGCCCGCTTCAACGCCGATGGCAGCGGCCAGTGGCTG
CCGCTGGACATCGCCGACGGCAACTTCCGCGCGGCCTGTCGCAAGGCCGGGGTGAGCTTCGCCGACCAGGGC
GAAGTGCTGATCAACACCCGCCTGGCCGCCGATGTCCTCGGCGCGACCAAGATGGATCGCCCGGAGTGGGGC
GCGGTCAACCCGGACAACGGTGACGTCTACTTCACCCTCACCAACAACACGTCGCGCACCGTCGCCGACGCG
GCCAACCCACGGGTGAAGAACGCCTACGGCCATATCATCCGCTGGCGCGAACGCAGCCGCGACTATGCCGGG
CAACGCTTCACCTGGGACCTGTTCATGCTCGCCGGTCCCGGCGAAGACAGCCGCGGCCCGGACGGCAAGCCG
CTGAACCAGGACAATATCCTGGCCAGCCCCGACGGCCTCTGGTTCGACCCGGAAGGCCGCCTGTGGATCCAG
ACCGACATGAGCGGCAGCCAGTTGAGCAGCGGCCCGTTCGGCAACAACCAGATGCTGGTGGCCGACCCGCGC
ACCGGCGAACTGAAGCGCTTCCTCACCGGTCCGCTGGGTTGCGAGGTGACCGGCATTGCCGCGACGCCGGAC
TTCCGTACGCTGTTCATCAACATCCAGCACCCGGGGGAAGGCTCGACCGCCGATAACCTCCTCAGCACCTGG
CCGGACGGGCCGGGCCGCCGGCCACGCTCGGCCACCGTGGTGATCACCCGCGAAGACGGCCGACGCCTGCTC
TGA
Translation:
MSLEKKDAILFGDGDELPSNHSNNPHMNDLIAGLGRRQVLAGGAALGALAFLGVALPASAAPAEAQAPAAEG
LRGLPFKRRNRLPFEAIASGRADTIRVPAGYKATPFIPWGTPISGSYPGFLDDASNSAQDQAEQIGMHHDGM
HFFPIDAQFGFGGGHISNHGLLVLNHEYIDAPLLHTNGPTVVDGKRTVADEVRKEINAHGVSVVEIRRNVRG
EWNVVPSQRNRRITAATPMRIAGPARGHELLRTRHSPDGTRTRGTHNNCSNGFTPWGTYLTCEENWVGYFST
QDSELPRELTRYGIRNTSRFGWETLAGDEFERFDATRKGKQAQDDYRNEPNNFGWIVEIDPFDPQSVPVKRT
ALGRFAHEGLVFAPVKPGRQVVCYSGDDSQNEYIYKYVSRDKFRPGRSNARLLDEGTLYVARFNADGSGQWL
PLDIADGNFRAACRKAGVSFADQGEVLINTRLAADVLGATKMDRPEWGAVNPDNGDVYFTLTNNTSRTVADA
ANPRVKNAYGHIIRWRERSRDYAGQRFTWDLFMLAGPGEDSRGPDGKPLNQDNILASPDGLWFDPEGRLWIQ
TDMSGSQLSSGPFGNNQMLVADPRTGELKRFLTGPLGCEVTGIAATPDFRTLFINIQHPGEGSTADNLLSTW
PDGPGRRPRSATVVITREDGRRLL*
AnnotationID:306GeneID:296
AnnotatorUID: diggins
Modification Date/Time: 2005-03-07 14:02:37
Gene Name:
Confidence Code:3
GeneProduct:putative phosphatase
Cell Localization:()
Synonyms:PA2635
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3211
Secondary Functional Category(ies):putative enzyme
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO07751.1|AE016810_254 (AE016810) Predicted phosphatase [Vibrio vulnificus CMCP6]
          Length = 680

 Score =  565 bits (1456), Expect = e-160
 Identities = 317/679 (46%), Positives = 397/679 (58%), Gaps = 52/679 (7%)








 
Structural Features:
COG3211, PhoX, Predicted phosphatase
CD-Length = 616 residues,  99.7% aligned
Score =  692 bits (1786), Expect = 0.0
Identities = 329/667 (49%), Positives = 395/667 (59%), Gaps = 64/667 (9%)






   
Genomic Context:






   
Comment:


















    ReferenceID:14105




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17737




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33217




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:296_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:296
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
486
                           PA2635_tr
                           translation of PA2635
                           672
                           99.70
                           99.70
                           0
                           3593.0
     

     
     
24833
                           gb|AAG06023.1|AE004692_2
                           (AE004692) hypothetical protein PA2635 [Pseudomonas aeruginosa PAO1]
                           672
                           99.55
                           99.70
                           0
                           3590.0
     

     
     
24835
                           dbj|BAC97318.1|
                           (AP005349) predicted phosphatase [Vibrio vulnificus YJ016]
                           715
                           45.59
                           57.48
                           78
                           1518.0
     

     
     
24834
                           gb|AAN55419.1|AE015679_5
                           (AE015679) conserved hypothetical protein [Shewanella oneidensis MR-1]
                           720
                           45.55
                           57.77
                           83
                           1529.0
     

     
     
24836
                           gb|AAO07751.1|AE016810_254
                           (AE016810) Predicted phosphatase [Vibrio vulnificus CMCP6]
                           715
                           45.45
                           57.34
                           78
                           1511.0
     

     






      

          
GC ORFID: 43298How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2635Glimmer Score: 

          
Start: 2351548Stop: 2353566

          
Length: 2019


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2635 translation of PA2635Homolog Bit Score 1388.0

          
Other Homologs:  t_PA2635 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGAGCCTGGAGAAAAAAGATGCCATCCTGTTCGGTGATGGCGACGAGTTGCCCAGCAACCATTCGAACAAC 
CCACACATGAACGACCTGATCGCCGGCCTCGGCCGCCGCCAGGTCCTGGCCGGCGGCGCGGCGCTCGGCGCC 
CTCGCCTTCCTCGGCGTCGCGCTCCCCGCCAGCGCCGCTCCCGCCGAAGCGCAGGCGCCCGCCGCGGAAGGC 
CTGCGCGGCTTGCCTTTCAAACGCCGCAACCGCTTACCCTTCGAAGCCATCGCCAGCGGCCGCGCCGATACC 
ATCCGGGTGCCCGCCGGCTACAAGGCGACGCCCTTCATACCCTGGGGCACCCCGATCAGCGGCAGTTATCCG 
GGCTTCCTCGACGACGCCAGCAACAGCGCCCAGGACCAGGCCGAACAGATCGGCATGCACCACGACGGCATG 
CACTTCTTCCCGATCGACGCGCAGTTCGGCTTCGGCGGCGGACACATCAGCAACCATGGCCTGCTGGTGCTC 
AACCATGAATACATCGACGCGCCGCTGCTGCACACCAATGGCCCGACCGTGGTCGATGGCAAGCGCACCGTC 
GCCGATGAAGTGCGCAAGGAAATCAACGCCCATGGCGTTTCCGTCGTGGAGATCCGTCGCAACGTGCGTGGC 
GAGTGGAATGTCGTGCCGTCGCAACGAAATCGCCGGATCACCGCCGCCACGCCGATGCGTATCGCCGGCCCG 
GCGCGCGGCCACGAACTGCTGCGCACCCGCCACAGTCCGGACGGCACCCGCACCCGCGGCACCCATAACAAC 
TGTTCCAACGGTTTCACCCCCTGGGGCACGTACCTCACCTGCGAGGAGAACTGGGTCGGCTATTTCTCCACC 
CAGGACAGCGAACTGCCGCGCGAACTGACCCGCTACGGCATTCGCAATACCAGCCGTTTCGGCTGGGAGACC 
CTGGCGGGCGACGAGTTCGAGCGCTTCGACGCCACCCGCAAGGGCAAACAGGCTCAGGACGACTACCGCAAC 
GAACCGAACAACTTCGGCTGGATCGTCGAGATCGACCCGTTCGACCCGCAATCGGTACCGGTCAAGCGCACC 
GCTCTCGGCCGCTTCGCCCACGAAGGCCTGGTCTTCGCCCCGGTCAAGCCGGGCCGCCAGGTAGTCTGCTAC 
TCTGGCGACGACTCGCAGAACGAGTACATCTACAAGTACGTCAGCCGCGACAAGTTCCGTCCGGGTCGCAGC 
AACGCTCGCCTGCTCGACGAAGGCACCCTCTACGTCGCCCGCTTCAACGCCGATGGCAGCGGCCAGTGGCTG 
CCGCTGGACATCGCCGACGGCAACTTCCGCGCGGCCTGTCGCAAGGCCGGGGTGAGCTTCGCCGACCAGGGC 
GAAGTGCTGATCAACACCCGCCTGGCCGCCGATGTCCTCGGCGCGACCAAGATGGATCGCCCGGAGTGGGGC 
GCGGTCAACCCGGACAACGGTGACGTCTACTTCACCCTCACCAACAACACGTCGCGCACCGTCGCCGACGCG 
GCCAACCCACGGGTGAAGAACGCCTACGGCCATATCATCCGCTGGCGCGAACGCAGCCGCGACTATGCCGGG 
CAACGCTTCACCTGGGACCTGTTCATGCTCGCCGGTCCCGGCGAAGACAGCCGCGGCCCGGACGGCAAGCCG 
CTGAACCAGGACAATATCCTGGCCAGCCCCGACGGCCTCTGGTTCGACCCGGAAGGCCGCCTGTGGATCCAG 
ACCGACATGAGCGGCAGCCAGTTGAGCAGCGGCCCGTTCGGCAACAACCAGATGCTGGTGGCCGACCCGCGC 
ACCGGCGAACTGAAGCGCTTCCTCACCGGTCCGCTGGGTTGCGAGGTGACCGGCATTGCCGCGACGCCGGAC 
TTCCGTACGCTGTTCATCAACATCCAGCACCCGGGGGAAGGCTCGACCGCCGATAACCTCCTCAGCACCTGG 
CCGGACGGGCCGGGCCGCCGGCCACGCTCGGCCACCGTGGTGATCACCCGCGAAGACGGCCGACGCCTGCTC 
TGA