ViewGene
Locus Name:
GeneID:
Location:

GeneID:2959
TrivialName: PA14_19580
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_19580
PAO1 Ortholog Locus:PA3442
Sequence Length:825
Protein Length:274
Start: 1692252
Stop: 1693076
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06830.1|AE004765_3 (AE004765) probable ATP-binding component of ABC transporter [Pseudomonas aeruginosa PAO1]
Identities = 273/274 (99%), Positives = 273/274 (99%)
Sequence:
ATGAACGCCCACAACGCCGCCCTTGGCGGCACTCCGCAGCGCCTCAAGCGCGGTATCCCGCTGGCCCTGCGC
GGAGTGGCGCGGCGCTTCGGCGAGCGCGAGGTGCTCAAGGACATCGACCTGCTGGTTCCGGCCGGGCAGTTC
GTCGCCATCGTCGGCCGCAGCGGCTGCGGCAAGAGCACCCTGCTGCGCCTGCTGGCCGGCCTCGACCAGCCC
AGCCGCGGCGAGTTGCTGGCCGGCTCGGCGGCGCTGGCCGAGGCCCGCGAGGACACCCGGCTGATGTTCCAG
GACTCGCGCCTGCTGCCGTGGAAGCGGGTGATCGACAACGTCGGCCTCGGCCTGCGCGGCGACTGGCGGGCG
AAGGCCCGGCAGGCGCTGCGGGCGGTCGGCCTGGCCGAGCGTGCCAACGAGTGGCCGGCGGCCCTGTCCGGC
GGGCAGAAGCAACGCGTCGCGCTGGCTCGCGCGCTGATCCACGAGCCGCGCCTGCTGTTGCTCGACGAGCCG
CTCGGCGCGCTCGATGCGCTGACCCGGATCGAGATGCAGCAACTGATCGAAGGACTCTGGCGCGAACACGGT
TTCACCGTCCTGCTGGTCACCCACGACGTCAGCGAGGCGGTGGCGGTGGCCGACCGGGTGATCCTCATCGAG
GACGGCGAGATCGGCCTCGACCTGCCGGTGGAACTGCCCCGGCCGCGCTCGCGTGGCTCGGCACGACTGGCC
GCGCTGGAAGCCGAAGTGCTCAACCGGGTGCTGGCGCAGCCGGAGCTGCCGCCGCAACCCGAACCCGTTTCA
CCCCTGCCCACGCAACTGCGCTGGGCGCTCTAA
Translation:
MNAHNAALGGTPQRLKRGIPLALRGVARRFGEREVLKDIDLLVPAGQFVAIVGRSGCGKSTLLRLLAGLDQP
SRGELLAGSAALAEAREDTRLMFQDSRLLPWKRVIDNVGLGLRGDWRAKARQALRAVGLAERANEWPAALSG
GQKQRVALARALIHEPRLLLLDEPLGALDALTRIEMQQLIEGLWREHGFTVLLVTHDVSEAVAVADRVILIE
DGEIGLDLPVELPRPRSRGSARLAALEAEVLNRVLAQPELPPQPEPVSPLPTQLRWAL*
AnnotationID:2967GeneID:2959
AnnotatorUID: diggins
Modification Date/Time: 2005-04-18 18:06:21
Gene Name:
Confidence Code:3
GeneProduct:putative aliphatic sulfonate transport ATP-binding protein
Cell Localization:()
Synonyms:ssuB
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:cd00267,pfam00005,COG1116,COG1126
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN65872.1|AE016215_7 (AE016774) sulfonate ABC transporter, ATP-binding subunit SsuB
           [Pseudomonas putida KT2440]
          Length = 270

 Score =  427 bits (1099), Expect = e-119
 Identities = 215/262 (82%), Positives = 239/262 (91%)

>emb|CAB40393.1| (AJ237695) putative aliphatic sulfonate transport ATP-binding
           protein [Escherichia coli]
          Length = 255

 Score =  347 bits (890), Expect = 4e-95
 Identities = 176/242 (72%), Positives = 203/242 (83%)

>gb|AAN42559.1|AE015123_1 (AE015123) putative ATP-binding component of a transport system
           [Shigella flexneri 2a str. 301]
          Length = 255

 Score =  338 bits (866), Expect = 3e-92
 Identities = 170/238 (71%), Positives = 198/238 (83%)






 
Structural Features:
cd00267, ABC_ATPase, ABC (ATP-binding cassette) transporter 
nucleotide-binding domain
CD-Length = 217 residues,  97.2% aligned
Score =  177 bits (450), Expect = 2e-45
Identities = 88/213 (41%), Positives = 128/213 (60%), Gaps = 15/213 (7%)

pfam00005, ABC_tran, ABC transporter.
CD-Length = 183 residues, 100.0% aligned
Score =  148 bits (374), Expect = 1e-36
Identities = 76/184 (41%), Positives = 112/184 (60%), Gaps = 12/184 (6%)

COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, 
ATPase component 
[Inorganic ion transport and metabolism]
CD-Length = 248 residues,  98.8% aligned
Score =  277 bits (711), Expect = 8e-76
Identities = 121/245 (49%), Positives = 160/245 (65%), Gaps = 8/245 (3%)

COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component 
[Amino acid transport and metabolism]
CD-Length = 240 residues,  88.3% aligned
Score =  189 bits (481), Expect = 4e-49
Identities = 85/213 (39%), Positives = 130/213 (61%), Gaps = 14/213 (6%)







   
Genomic Context:






   
Comment:
another possible gene name: ycbE


















    ReferenceID:5921




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23063




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32126




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2959_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2959
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4786
                           PA3442_tr
                           translation of PA3442
                           274
                           99.63
                           99.63
                           0
                           1369.0
     

     
     
136813
                           gb|AAG06830.1|AE004765_3
                           (AE004765) probable ATP-binding component of ABC transporter [Pseudomonas aeruginosa PAO1]
                           274
                           99.63
                           99.63
                           0
                           1369.0
     

     
     
136814
                           gb|AAC31907.1|
                           (AF075709) ABC transporter ATP-binding subunit [Pseudomonas putida]
                           274
                           79.92
                           88.32
                           4
                           1110.0
     

     
     
136815
                           gb|AAN65872.1|AE016215_7
                           (AE016774) sulfonate ABC transporter, ATP-binding subunit SsuB [Pseudomonas putida KT2440]
                           274
                           78.83
                           87.59
                           4
                           1093.0
     

     
     
136817
                           gb|AAO58740.1|
                           (AE016875) aliphatic sulfonates ABC transporter, ATP-binding protein [Pseudomonas syringae pv. tomato str. DC3000]
                           274
                           78.46
                           87.22
                           4
                           1077.0
     

     






      

          
GC ORFID: 45961How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3442Glimmer Score: 

          
Start: 3261680Stop: 3260856

          
Length: 825


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA3442 translation of PA3442Homolog Bit Score 531.0

          
Other Homologs:  psyr_15may02_Scaffold6_revised_gene6502 (ORF: BLASTX 427.0), psyr_15may02_Scaffold8_revised_gene7773 (ORF: BLASTX 219.0), t_PA0184 (ORF: BLASTX 178.0), t_PA2294 (ORF: BLASTX 177.0), t_PA3937 (ORF: BLASTX 164.0), psyr_15may02_Scaffold7_revised_gene7016 (ORF: BLASTX 164.0), psyr_15may02_Scaffold2_revised_gene3249 (ORF: BLASTX 146.0), t_PA2308 (ORF: BLASTX 142.0), psyr_15may02_Scaffold7_revised_gene7291 (ORF: BLASTX 140.0), t_PA3442 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACGCCCACAACGCCGCCCTTGGCGGCACTCCGCAGCGCCTCAAGCGCGGTATCCCGCTGGCCCTGCGC 
GGAGTGGCGCGGCGCTTCGGCGAGCGCGAGGTGCTCAAGGACATCGACCTGCTGGTTCCGGCCGGGCAGTTC 
GTCGCCATCGTCGGCCGCAGCGGCTGCGGCAAGAGCACCCTGCTGCGCCTGCTGGCCGGCCTCGACCAGCCC 
AGCCGCGGCGAGTTGCTGGCCGGCTCGGCGGCGCTGGCCGAGGCCCGCGAGGACACCCGGCTGATGTTCCAG 
GACTCGCGCCTGCTGCCGTGGAAGCGGGTGATCGACAACGTCGGCCTCGGCCTGCGCGGCGACTGGCGGGCG 
AAGGCCCGGCAGGCGCTGCGGGCGGTCGGCCTGGCCGAGCGTGCCAACGAGTGGCCGGCGGCCCTGTCCGGC 
GGGCAGAAGCAACGCGTCGCGCTGGCTCGCGCGCTGATCCACGAGCCGCGCCTGCTGTTGCTCGACGAGCCG 
CTCGGCGCGCTCGATGCGCTGACCCGGATCGAGATGCAGCAACTGATCGAAGGACTCTGGCGCGAACACGGT 
TTCACCGTCCTGCTGGTCACCCACGACGTCAGCGAGGCGGTGGCGGTGGCCGACCGGGTGATCCTCATCGAG 
GACGGCGAGATCGGCCTCGACCTGCCGGTGGAACTGCCCCGGCCGCGCTCGCGTGGCTCGGCACGACTGGCC 
GCGCTGGAAGCCGAAGTGCTCAACCGGGTGCTGGCGCAGCCGGAGCTGCCGCCGCAACCCGAACCCGTTTCA 
CCCCTGCCCACGCAACTGCGCTGGGCGCTCTAA