ViewGene

Locus Name:
GeneID:
Location:

GeneID:2958
TrivialName: PA14_40980
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_40980
PAO1 Ortholog Locus:PA1821
Sequence Length:813
Protein Length:270
Start: 3654513
Stop: 3653701
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05210.1|AE004608_9 (AE004608) probable enoyl-CoA hydratase/isomerase [Pseudomonas aeruginosa PAO1]
Identities = 270/270 (100%), Positives = 270/270 (100%)
Sequence:
GTGACCGAGTACAACGCATTCCGTGTGGAGCTGGCAGACAAGATCGCCCACGTCCAGATCAACCGTCCGGAC
AAGATCAATGCCATGAACCAGGACTTCTGGCGCGAGATCATCGAGATCTTCCGCTGGGTCGACGATACCGAC
GAAGTGCGGGTGGTCGTGCTGTCCGGGGCGGGCAAGCATTTTTCCTCGGGGATCGACCTGATGCTGCTGGCC
CAGGTCGGCAGCCAACTGGGCAAGGACGTCGGCCGCAACGCCGACGCCCTGCGTCGCAAGATCCTCGAGCTG
CAGGCCTCGTTCAACGCGGTCGACAACTGCCGCAAGCCGGTGCTCGCGGCGATCCAGGGCTACTGCCTGGGC
GGCGCCATCGACCTGGTCTCGGCCTGCGACATGCGCTACTCGACCGCCGACGCGCAGTTCTCGATCAAGGAG
ATCGACATCGGCATGGCCGCCGACGTCGGCACCCTGCAGCGCCTGCCGCGGATCATCGGCGATGGCATGATG
CGCGAGCTGGCCTACACCGGGCGCATGGTCGACGGCGAAGAGGCACGGAGCATCGGCCTGGTCAATCGTACC
TACGCGGACCAGGCCGCATTGATGGATGGGGTCTTCGAACTGGCGCGGCAGATCGCCGCGAAGTCGCCGATC
GCCATCCGTGGTACCAAGGAAATGATCCGCTATATGCGCGACCACCGGGTCGACGACGGCCTCGAGTACGTC
GCTACCTGGAACGCCGCCATGCTCCAGTCCGCCGACCTGCGGGTGGCGATGGCCGCGCATATGGCCAAGCAG
AAGCCGGAATTCGCTGATTGA
Translation:
MTEYNAFRVELADKIAHVQINRPDKINAMNQDFWREIIEIFRWVDDTDEVRVVVLSGAGKHFSSGIDLMLLA
QVGSQLGKDVGRNADALRRKILELQASFNAVDNCRKPVLAAIQGYCLGGAIDLVSACDMRYSTADAQFSIKE
IDIGMAADVGTLQRLPRIIGDGMMRELAYTGRMVDGEEARSIGLVNRTYADQAALMDGVFELARQIAAKSPI
AIRGTKEMIRYMRDHRVDDGLEYVATWNAAMLQSADLRVAMAAHMAKQKPEFAD*
AnnotationID:2966GeneID:2958
AnnotatorUID: diggins
Modification Date/Time: 2005-03-01 19:07:01
Gene Name:
Confidence Code:3
GeneProduct:putative Enoyl-CoA hydratase
Cell Localization:()
Synonyms:PA1821
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:putative carnithine racemase
Functional Category Confidence Code:5
COGs:COG1024,pfam00378
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN69622.1|AE016595_10 (AE016789) enoyl-CoA hydratase/isomerase family protein
           [Pseudomonas putida KT2440]
          Length = 280

 Score =  432 bits (1112), Expect = e-121
 Identities = 207/270 (76%), Positives = 241/270 (89%)

>gb|AAO56220.1| (AE016865) enoyl-CoA hydratase/isomerase family protein
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 270

 Score =  408 bits (1049), Expect = e-113
 Identities = 201/268 (75%), Positives = 230/268 (85%)

>gb|AAK22340.1| (AE005708) enoyl-CoA hydratase/isomerase family protein
           [Caulobacter crescentus CB15]
          Length = 286

 Score =  235 bits (600), Expect = 2e-61
 Identities = 115/270 (42%), Positives = 168/270 (62%), Gaps = 3/270 (1%)

Structural Features:
COG1024, CaiD, Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]
CD-Length = 257 residues, 100.0% aligned
Score =  192 bits (490), Expect = 3e-50
Identities = 97/268 (36%), Positives = 145/268 (54%), Gaps = 11/268 (4%)

pfam00378, ECH, Enoyl-CoA hydratase/isomerase family.
CD-Length = 168 residues,  98.2% aligned
Score =  121 bits (304), Expect = 1e-28
Identities = 59/176 (33%), Positives = 100/176 (56%), Gaps = 11/176 (6%)
Genomic Context:
Comment:
ReferenceID:14707
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:23061
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:37096
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:2958_cdd.html
URL:
Homologs By Global Alignment
Gene ID:2958

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
4785 PA1821_tr translation of PA1821 270 99.99 99.99 0 1368.0
136803 gb|AAG05210.1|AE004608_9 (AE004608) probable enoyl-CoA hydratase/isomerase [Pseudomonas aeruginosa PAO1] 270 99.62 99.99 0 1365.0
136804 gb|AAN69622.1|AE016595_10 (AE016789) enoyl-CoA hydratase/isomerase family protein [Pseudomonas putida KT2440] 280 74.28 86.07 10 1115.0
136805 gb|AAO56220.1| (AE016865) enoyl-CoA hydratase/isomerase family protein [Pseudomonas syringae pv. tomato str. DC3000] 270 74.07 85.55 0 1044.0
136806 gb|AAQ60156.1| (AE016918) probable enoyl-CoA hydratase [Chromobacterium violaceum ATCC 12472] 271 47.97 66.42 1 661.0
GC ORFID: 45960How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1821Glimmer Score:
Start: 1299397Stop: 1300209
Length: 813
Start Codon: GTGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA1821 translation of PA1821Homolog Bit Score 531.0
Other Homologs: psyr_15may02_Scaffold1_revised_gene1379 (ORF: BLASTX 414.0), t_PA1821 (ORF: GLIMMER)
GC ORF Sequence
GTGACCGAGTACAACGCATTCCGTGTGGAGCTGGCAGACAAGATCGCCCACGTCCAGATCAACCGTCCGGAC
AAGATCAATGCCATGAACCAGGACTTCTGGCGCGAGATCATCGAGATCTTCCGCTGGGTCGACGATACCGAC
GAAGTGCGGGTGGTCGTGCTGTCCGGGGCGGGCAAGCATTTTTCCTCGGGGATCGACCTGATGCTGCTGGCC
CAGGTCGGCAGCCAACTGGGCAAGGACGTCGGCCGCAACGCCGACGCCCTGCGTCGCAAGATCCTCGAGCTG
CAGGCCTCGTTCAACGCGGTCGACAACTGCCGCAAGCCGGTGCTCGCGGCGATCCAGGGCTACTGCCTGGGC
GGCGCCATCGACCTGGTCTCGGCCTGCGACATGCGCTACTCGACCGCCGACGCGCAGTTCTCGATCAAGGAG
ATCGACATCGGCATGGCCGCCGACGTCGGCACCCTGCAGCGCCTGCCGCGGATCATCGGCGATGGCATGATG
CGCGAGCTGGCCTACACCGGGCGCATGGTCGACGGCGAAGAGGCACGGAGCATCGGCCTGGTCAATCGTACC
TACGCGGACCAGGCCGCATTGATGGATGGGGTCTTCGAACTGGCGCGGCAGATCGCCGCGAAGTCGCCGATC
GCCATCCGTGGTACCAAGGAAATGATCCGCTATATGCGCGACCACCGGGTCGACGACGGCCTCGAGTACGTC
GCTACCTGGAACGCCGCCATGCTCCAGTCCGCCGACCTGCGGGTGGCGATGGCCGCGCATATGGCCAAGCAG
AAGCCGGAATTCGCTGATTGA