ViewGene
Locus Name:
GeneID:
Location:

GeneID:2957
TrivialName: PA14_70530
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_70530
PAO1 Ortholog Locus:PA5342
Sequence Length:801
Protein Length:266
Start: 6283977
Stop: 6283177
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08727.1|AE004946_11 (AE004946) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 264/266 (99%), Positives = 264/266 (99%)
Sequence:
ATGGCTGCCAACCGGTTGTTGGCGCGTCCCTGGCTGCCTGGCGTGGAGCTGTTCCATGCGGACTTCTCCGGC
CAGGCGTTCGGCCGCCACAGCCATTCGGCCTTCGCCATCGGCTCGATCCTCCACGGCGTCGGCGGCTACCAG
TGCCGCGGGCGGCGCCATGCGCTGCCGGCCGGCACCCTGTCGCTGATGAACCCGGAAGAGCCGCATACCGGG
CACGCCGAATCCGAGCGGCTGGTCTACCGGATGCTCTATGTCGAGGAAACGCGCCTGCTCGGCCTGCTCGGC
CGCAAACAGTTGCCGCGCGGCTTCGGCGAGCTGAACCCGGCCGACGACGGCAGCGTGGCGGTTGGCCTGGCG
CGACTGGCCGAGGACTTCCAGCGCAGCGACGCATTGGGGTTGGAAAGCCGCCTGCTGGCCTTGCTCGAACAG
GTCTTCGTGCGCCACGGCGGCTTGCGCCCGGCGGCCGCGGCGCCCCGCGACGGCGGAACCACCGCACGCCTG
CGCGATTACCTGGAAGCGCATGCCACCGAGGCGCTCGGTCTGGACCAACTGGCGCAGTTGCTGCAGCGCCAT
CCGCGCCACCTCATCGAGGCTTTCCGGCGTGCCTACGGCGTGCCGCCGCATACCTACCAACTGCAATGCCGG
GTGCGCCAGGCCAAGCGCCTGTTGCTGGAAGAACGGCCGCTGGCGGAACTCGCCCAGCACCTCGGCTTCTAC
GACCAGGCGCACTTCTCCACGACCTTCCGGCGTTTCACCGGGGTCACTCCGGGGCAGTTCCGGCGCAGCGCC
AAGACCTGA
Translation:
MAANRLLARPWLPGVELFHADFSGQAFGRHSHSAFAIGSILHGVGGYQCRGRRHALPAGTLSLMNPEEPHTG
HAESERLVYRMLYVEETRLLGLLGRKQLPRGFGELNPADDGSVAVGLARLAEDFQRSDALGLESRLLALLEQ
VFVRHGGLRPAAAAPRDGGTTARLRDYLEAHATEALGLDQLAQLLQRHPRHLIEAFRRAYGVPPHTYQLQCR
VRQAKRLLLEERPLAELAQHLGFYDQAHFSTTFRRFTGVTPGQFRRSAKT*
AnnotationID:2965GeneID:2957
AnnotatorUID: diggins
Modification Date/Time: 2005-03-16 19:07:48
Gene Name:
Confidence Code:3
GeneProduct:putative AraC-family transcriptional regulator
Cell Localization:()
Synonyms:PA5342
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam02311,smart00342
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
pfam02311, AraC_binding, AraC-like ligand binding domain
CD-Length = 140 residues, 100.0% aligned
Score = 79.7 bits (196), Expect = 3e-16
Identities = 52/140 (37%), Positives = 66/140 (47%), Gaps = 3/140 (2%)

smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein
CD-Length = 84 residues,  98.8% aligned
Score = 79.1 bits (195), Expect = 5e-16
Identities = 31/83 (37%), Positives = 48/83 (57%), Gaps = 1/83 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:5917




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23059




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34712




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2957_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2957
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4784
                           PA5342_tr
                           translation of PA5342
                           266
                           99.24
                           99.24
                           0
                           1370.0
     

     
     
136802
                           gb|AAG08727.1|AE004946_11
                           (AE004946) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           266
                           99.24
                           99.24
                           0
                           1370.0
     

     






      

          
GC ORFID: 45959How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5342Glimmer Score: 

          
Start: 5547666Stop: 5546866

          
Length: 801


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5342 translation of PA5342Homolog Bit Score 532.0

          
Other Homologs:  t_PA5342 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCTGCCAACCGGTTGTTGGCGCGTCCCTGGCTGCCTGGCGTGGAGCTGTTCCATGCGGACTTCTCCGGC 
CAGGCGTTCGGCCGCCACAGCCATTCGGCCTTCGCCATCGGCTCGATCCTCCACGGCGTCGGCGGCTACCAG 
TGCCGCGGGCGGCGCCATGCGCTGCCGGCCGGCACCCTGTCGCTGATGAACCCGGAAGAGCCGCATACCGGG 
CACGCCGAATCCGAGCGGCTGGTCTACCGGATGCTCTATGTCGAGGAAACGCGCCTGCTCGGCCTGCTCGGC 
CGCAAACAGTTGCCGCGCGGCTTCGGCGAGCTGAACCCGGCCGACGACGGCAGCGTGGCGGTTGGCCTGGCG 
CGACTGGCCGAGGACTTCCAGCGCAGCGACGCATTGGGGTTGGAAAGCCGCCTGCTGGCCTTGCTCGAACAG 
GTCTTCGTGCGCCACGGCGGCTTGCGCCCGGCGGCCGCGGCGCCCCGCGACGGCGGAACCACCGCACGCCTG 
CGCGATTACCTGGAAGCGCATGCCACCGAGGCGCTCGGTCTGGACCAACTGGCGCAGTTGCTGCAGCGCCAT 
CCGCGCCACCTCATCGAGGCTTTCCGGCGTGCCTACGGCGTGCCGCCGCATACCTACCAACTGCAATGCCGG 
GTGCGCCAGGCCAAGCGCCTGTTGCTGGAAGAACGGCCGCTGGCGGAACTCGCCCAGCACCTCGGCTTCTAC 
GACCAGGCGCACTTCTCCACGACCTTCCGGCGTTTCACCGGGGTCACTCCGGGGCAGTTCCGGCGCAGCGCC 
AAGACCTGA