ViewGene
Locus Name:
GeneID:
Location:

GeneID:2956
TrivialName: PA14_67180
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_67180
PAO1 Ortholog Locus:
Sequence Length:870
Protein Length:289
Start: 5996854
Stop: 5995985
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08472.1|AE004921_9 (AE004921) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 249/287 (86%), Positives = 267/287 (93%)
Sequence:
ATGGCTATTGGACTTTGGGTCGTGCTCTGTCTTGCAGGCGTCCGCGTGATGGCCAACAGCAAATCGTTTGTC
TGCGTTAATGAAAAAGACCATCTGCCGCCGTTGGATTCGCAAACCGATGCTTGGTACCGCGAAGCAGCCGCC
TTGGCCAAGCCCGATACTCTGCGGCCCTGGGGCCGTATCGTCGAGCTTTACAGTAAGGCAGTGGAGCGCGGC
CATTGGAAGGCCATGCATAATTTGGCGAATCTTTATCGTACAGGGTGGCCCGGAGGAGTAGAAAAAGATACG
CAGAAGGCATTGGATCTCTATCAAAAGATGATAGATCTGGATGTGCCTCAGGGGTTCTATGATATGGGAGCA
ATGATTGGAAATCGCGCCGGGGTTAAAAACCCTGCAACTGACGGACTTACTTTCCTTGATAAGGCTGCTAGC
CTAGGAAATCCGCCGGCACTAACTGAACTAGGTAAGCTTTATATATATGTGGCCAAAAAAAAGGATTTGGGG
TTGGCGTATACTCACTGTGCTGCTAGTCAGGGTTATGCGCCGGCTAGTTATGAGCTGGGGGCGTATTACAAG
ATAGTAGAACACAATTTCCCAAAGGCACTGGTTTATTATCAGGTGTCAGTCTCTCAGGGGGGCAAGAGTGCG
GCTTTTTTCCTATCACGAGTCTTCGGAAGTGAGACTCCCCCTGCAAGTGCAATGTGGTACGCCCCCGACGAA
AAGTTGCGAGAAGCGTATTATTCAATCTACAAAAAGCTTGAAGCTGACCCCGACTTACGTTTCCCCAATCTG
ATAGAGGACTATCCTCTGCCTCCTCATCCCACCCAGGGCTACGACGCGGACCGCCCAGACTGGAAGCCGGAG
CGGTAA
Translation:
MAIGLWVVLCLAGVRVMANSKSFVCVNEKDHLPPLDSQTDAWYREAAALAKPDTLRPWGRIVELYSKAVERG
HWKAMHNLANLYRTGWPGGVEKDTQKALDLYQKMIDLDVPQGFYDMGAMIGNRAGVKNPATDGLTFLDKAAS
LGNPPALTELGKLYIYVAKKKDLGLAYTHCAASQGYAPASYELGAYYKIVEHNFPKALVYYQVSVSQGGKSA
AFFLSRVFGSETPPASAMWYAPDEKLREAYYSIYKKLEADPDLRFPNLIEDYPLPPHPTQGYDADRPDWKPE
R*
AnnotationID:2964GeneID:2956
AnnotatorUID: danlee
Modification Date/Time: 2006-03-17 12:12:57
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0790
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|9951381|gb|AAG08472.1|  hypothetical protein PA5087 [Pseudomonas aeruginosa PAO1]
 gi|15600280|ref|NP_253774.1|  hypothetical protein PA5087 [Pseudomonas aeruginosa PAO1]
Length=289

 Score =  532 bits (1370),  Expect = 7e-150
 Identities = 249/287 (86%), Positives = 267/287 (93%), Gaps = 0/287 (0%)

gi|9951382|gb|AAG08473.1|  hypothetical protein PA5088 [Pseudomonas aeruginosa PAO1]
 gi|15600281|ref|NP_253775.1|  hypothetical protein PA5088 [Pseudomonas aeruginosa PAO1]
Length=293

 Score =  457 bits (1177),  Expect = 2e-127
 Identities = 216/282 (76%), Positives = 239/282 (84%), Gaps = 1/282 (0%)

gi|9951380|gb|AAG08471.1|  hypothetical protein PA5086 [Pseudomonas aeruginosa PAO1]
 gi|15600279|ref|NP_253773.1|  hypothetical protein PA5086 [Pseudomonas aeruginosa PAO1]
Length=213

 Score =  444 bits (1143),  Expect = 1e-123
 Identities = 212/213 (99%), Positives = 212/213 (99%), Gaps = 0/213 (0%)








 
Structural Features:
COG0790, FOG: TPR repeat, SEL1 subfamily [General function prediction only].
             CD-Length = 292 residues,  99.7% aligned
             Score =  103 bits (256), Expect = 3e-23






   
Genomic Context:






   
Comment:
C-terminal 213 amino acids 212/213 (99%) identical to PA5086 (PA14_67180 has and extra 
76 amino acid N-terminus).


















    ReferenceID:5915




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23057




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34978




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2956_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2956
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4781
                           PA5087_tr
                           translation of PA5087
                           289
                           86.15
                           92.73
                           0
                           1369.0
     

     
     
136799
                           gb|AAG08472.1|AE004921_9
                           (AE004921) hypothetical protein PA5087 [Pseudomonas aeruginosa PAO1]
                           289
                           86.15
                           92.73
                           0
                           1369.0
     

     
     
4782
                           PA5088_tr
                           translation of PA5088
                           294
                           74.14
                           82.31
                           6
                           1172.0
     

     
     
136800
                           gb|AAG08473.1|AE004921_10
                           (AE004921) hypothetical protein PA5088 [Pseudomonas aeruginosa PAO1]
                           294
                           74.14
                           82.31
                           6
                           1172.0
     

     
     
4783
                           PA5086_tr
                           translation of PA5086
                           289
                           73.35
                           73.35
                           76
                           1143.0
     

     






      

          
GC ORFID: 45958How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5087Glimmer Score: 

          
Start: 5260539Stop: 5259670

          
Length: 870


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA5087 translation of PA5087Homolog Bit Score 532.0

          
Other Homologs:  t_PA5088 (ORF: BLASTX 458.0), t_PA5086 (ORF: BLASTX 444.0)

          
GC ORF Sequence

           
ATGGCTATTGGACTTTGGGTCGTGCTCTGTCTTGCAGGCGTCCGCGTGATGGCCAACAGCAAATCGTTTGTC 
TGCGTTAATGAAAAAGACCATCTGCCGCCGTTGGATTCGCAAACCGATGCTTGGTACCGCGAAGCAGCCGCC 
TTGGCCAAGCCCGATACTCTGCGGCCCTGGGGCCGTATCGTCGAGCTTTACAGTAAGGCAGTGGAGCGCGGC 
CATTGGAAGGCCATGCATAATTTGGCGAATCTTTATCGTACAGGGTGGCCCGGAGGAGTAGAAAAAGATACG 
CAGAAGGCATTGGATCTCTATCAAAAGATGATAGATCTGGATGTGCCTCAGGGGTTCTATGATATGGGAGCA 
ATGATTGGAAATCGCGCCGGGGTTAAAAACCCTGCAACTGACGGACTTACTTTCCTTGATAAGGCTGCTAGC 
CTAGGAAATCCGCCGGCACTAACTGAACTAGGTAAGCTTTATATATATGTGGCCAAAAAAAAGGATTTGGGG 
TTGGCGTATACTCACTGTGCTGCTAGTCAGGGTTATGCGCCGGCTAGTTATGAGCTGGGGGCGTATTACAAG 
ATAGTAGAACACAATTTCCCAAAGGCACTGGTTTATTATCAGGTGTCAGTCTCTCAGGGGGGCAAGAGTGCG 
GCTTTTTTCCTATCACGAGTCTTCGGAAGTGAGACTCCCCCTGCAAGTGCAATGTGGTACGCCCCCGACGAA 
AAGTTGCGAGAAGCGTATTATTCAATCTACAAAAAGCTTGAAGCTGACCCCGACTTACGTTTCCCCAATCTG 
ATAGAGGACTATCCTCTGCCTCCTCATCCCACCCAGGGCTACGACGCGGACCGCCCAGACTGGAAGCCGGAG 
CGGTAA