ViewGene

Locus Name:
GeneID:
Location:

GeneID:2955
TrivialName: PA14_57880
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_57880
PAO1 Ortholog Locus:PA4456
Sequence Length:810
Protein Length:269
Start: 5152482
Stop: 5151673
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07844.1|AE004859_13 (AE004859) probable ATP-binding component of ABC transporter [Pseudomonas aeruginosa PAO1]
Identities = 269/269 (100%), Positives = 269/269 (100%)
Sequence:
ATGAGCACCGATAGTGCCTACGCGGTCGAGTTGAAGGGCCTGACCTTCAAGCGCGGATCGCGGGCGATTTTC
GACAACATCGATGTGCGTATCCCGCGCGGAAAGGTGACCGGCATCATGGGCCCGTCCGGTTGCGGCAAGACC
ACGTTGCTGCGGCTGATCGCCTCCCAGTTGCGTCCTTCGAAGGGGGAGGTCTGGGTCAACGGGCAGAACCTG
CCGCAGCTTTCGCGCGGCGACCTGTTCGACATGCGCAAGCAGTTCGGCGTGCTGTTCCAGAGCGGGGCGCTG
TTCACCGATCTCGACGTCTTCGAGAACGTCGCGTTTCCGCTGCGCGTGCATACCCAGCTGCCGGAAGAAATG
ATCCGCGACATCGTCCTGATGAAGCTTCAGGCCGTCGGCCTGCGCGGCGCCGTGGAACTGATGCCGGACGAG
CTTTCCGGCGGCATGAAGCGCCGCGTCGCCCTGGCCCGGGCGATCGCCCTGGACCCGCAGATCCTGCTCTAC
GACGAGCCGTTCGTGGGGCAGGATCCGATCGCCATGGGCGTCCTGGTGCGCCTGATCCGCCTGCTCAACGAT
GCCCTCGGCATCACCAGCATCGTGGTTTCCCATGACCTGGCCGAGACCGCCAGCATCGCCGACTACATCTAT
ATCGTCGGCGACGGCCGGGTACTTGGCCACGGGACGCCGGACGTCCTCAAGGAAACCGACGATCCTCGTATC
CGCCAGTTCGTCAAGGGAATCCCGGATGGTCCCGTTCCGTTCCATTATCCGGCCCGCGACTACCGGGCCGAC
CTGCTGGGAGAGCGCTGA
Translation:
MSTDSAYAVELKGLTFKRGSRAIFDNIDVRIPRGKVTGIMGPSGCGKTTLLRLIASQLRPSKGEVWVNGQNL
PQLSRGDLFDMRKQFGVLFQSGALFTDLDVFENVAFPLRVHTQLPEEMIRDIVLMKLQAVGLRGAVELMPDE
LSGGMKRRVALARAIALDPQILLYDEPFVGQDPIAMGVLVRLIRLLNDALGITSIVVSHDLAETASIADYIY
IVGDGRVLGHGTPDVLKETDDPRIRQFVKGIPDGPVPFHYPARDYRADLLGER*
AnnotationID:2963GeneID:2955
AnnotatorUID: diggins
Modification Date/Time: 2005-05-03 06:06:09
Gene Name:
Confidence Code:3
GeneProduct:putative toluene tolerance ABC efflux transporter
Cell Localization:()
Synonyms:PA4456
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1127,COG1126
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN66583.1|AE016286_7 (AE016777) toluene tolerance ABC efflux transporter, ATP-binding
           protein [Pseudomonas putida KT2440]
          Length = 269

 Score =  471 bits (1213), Expect = e-132
 Identities = 235/269 (87%), Positives = 251/269 (93%)

>gb|AAO57896.1| (AE016872) toluene tolerance ABC transporter, ATP-binding protein,
           putative [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 269

 Score =  465 bits (1197), Expect = e-130
 Identities = 229/269 (85%), Positives = 254/269 (94%)

>gb|AAN82395.1|AE016767_155 (AE016767) Hypothetical ABC transporter ATP-binding protein yrbF
           [Escherichia coli CFT073]
          Length = 269

 Score =  336 bits (862), Expect = 7e-92
 Identities = 159/266 (59%), Positives = 206/266 (77%)
Structural Features:
COG1127, Ttg2A, ABC-type transport system involved in resistance 
to organic solvents, ATPase component 
[Secondary metabolites biosynthesis, transport, and catabolism]
CD-Length = 263 residues, 100.0% aligned
Score =  378 bits (973), Expect = 6e-106
Identities = 151/263 (57%), Positives = 199/263 (75%), Gaps = 1/263 (0%)

COG1126, GlnQ, ABC-type polar amino acid transport system, 
ATPase component 
[Amino acid transport and metabolism]
CD-Length = 240 residues,  98.8% aligned
Score =  180 bits (459), Expect = 3e-46
Identities = 78/240 (32%), Positives = 137/240 (57%), Gaps = 4/240 (1%)
Genomic Context:
Comment:
ReferenceID:5913
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:23055
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:31495
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:2955_cdd.html
URL:
Homologs By Global Alignment
Gene ID:2955

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
4779 PA4456_tr translation of PA4456 269 99.99 99.99 0 1370.0
136743 gb|AAG07844.1|AE004859_13 (AE004859) probable ATP-binding component of ABC transporter [Pseudomonas aeruginosa PAO1] 269 99.99 99.99 0 1370.0
136744 gb|AAD17957.1| (AF106002) toluene tolerance protein Ttg2A [Pseudomonas putida] 269 87.73 93.68 0 1219.0
136745 gb|AAN66583.1|AE016286_7 (AE016777) toluene tolerance ABC efflux transporter, ATP-binding protein [Pseudomonas putida KT2440] 269 87.36 93.30 0 1213.0
136746 dbj|BAB83589.1| (AB066294) ORF1 [Pseudomonas putida] 269 87.36 93.30 0 1213.0
GC ORFID: 45957How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4456Glimmer Score:
Start: 4416161Stop: 4415352
Length: 810
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA4456 translation of PA4456Homolog Bit Score 532.0
Other Homologs: psyr_15may02_Scaffold4_revised_gene5519 (ORF: BLASTX 469.0), t_PA3212 (ORF: BLASTX 172.0), t_PA4456 (ORF: GLIMMER)
GC ORF Sequence
ATGAGCACCGATAGTGCCTACGCGGTCGAGTTGAAGGGCCTGACCTTCAAGCGCGGATCGCGGGCGATTTTC
GACAACATCGATGTGCGTATCCCGCGCGGAAAGGTGACCGGCATCATGGGCCCGTCCGGTTGCGGCAAGACC
ACGTTGCTGCGGCTGATCGCCTCCCAGTTGCGTCCTTCGAAGGGGGAGGTCTGGGTCAACGGGCAGAACCTG
CCGCAGCTTTCGCGCGGCGACCTGTTCGACATGCGCAAGCAGTTCGGCGTGCTGTTCCAGAGCGGGGCGCTG
TTCACCGATCTCGACGTCTTCGAGAACGTCGCGTTTCCGCTGCGCGTGCATACCCAGCTGCCGGAAGAAATG
ATCCGCGACATCGTCCTGATGAAGCTTCAGGCCGTCGGCCTGCGCGGCGCCGTGGAACTGATGCCGGACGAG
CTTTCCGGCGGCATGAAGCGCCGCGTCGCCCTGGCCCGGGCGATCGCCCTGGACCCGCAGATCCTGCTCTAC
GACGAGCCGTTCGTGGGGCAGGATCCGATCGCCATGGGCGTCCTGGTGCGCCTGATCCGCCTGCTCAACGAT
GCCCTCGGCATCACCAGCATCGTGGTTTCCCATGACCTGGCCGAGACCGCCAGCATCGCCGACTACATCTAT
ATCGTCGGCGACGGCCGGGTACTTGGCCACGGGACGCCGGACGTCCTCAAGGAAACCGACGATCCTCGTATC
CGCCAGTTCGTCAAGGGAATCCCGGATGGTCCCGTTCCGTTCCATTATCCGGCCCGCGACTACCGGGCCGAC
CTGCTGGGAGAGCGCTGA