ViewGene
Locus Name:
GeneID:
Location:

GeneID:2953
TrivialName: PA14_24980
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_24980
PAO1 Ortholog Locus:PA3022
Sequence Length:807
Protein Length:268
Start: 2184172
Stop: 2184978
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06410.1|AE004727_6 (AE004727) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 268/268 (100%), Positives = 268/268 (100%)
Sequence:
ATGTTCCGTCTCTCCGCGCTGTACCGCTATCCGATCAAGTCTTCCGCCGCCGAGTCCCTGGAGCGCGTCGCG
CTCGATGCGCTGGGCGTGGTCGGCGACCGACGCTGGATGGCGGTGGACACCGAAACCGGACGTTTCTTCACC
CAGCGCCTGCTGCCGCAGCTGGGGCGTATCCAGGCGCGCTGGGCGGCGCCGGAGGTCCTGCGGCTGAATGCG
CCGGGGATGTCCGAGCTGAGCCTCGAAGTACCGGCAGCCGACGCCAACCTGCGTGGCGTCACGGTCTGGCGC
GATACCTTGCAGGCGCCGGATGCCGGCGACGCCGCAGCGGACTGGCTGACGCGCTTCCTCGGCCGCCCGACG
CGCCTGGTGCACATTCCCGAGGCGCGCGCGCGGCAGGTCGATACCGGCTACGCCGAGCCGGGGCAGAAGGTG
CATTTCGCCGACGGTTTCCCGCTGCTGCTGATCGGCCAGGCTTCGCTCGACGACCTCAGCCAGCGGGTCGGC
CGGCCGTTGGAGATGCTGCGCTTCCGTCCCAACCTGGTGGTGGAAGGCAGCGCCGCGTTCGCCGAGGACGGC
TGGAAACGCATCCGCATCGGCTCGGTCGAGTTCGTCGTGGCCAAGCCCTGTTCCCGCTGCATCCTCACCACC
CTGGATCCGGCGACCGGCGAGCGCAACGAGGACCGCGAGCCGCTGACGACCCTGAAGACCTACCGGGAAAAG
GATGGCGCGGTGCTGTTCGGGCAGAACCTGATTGCGCTAGGACAGGGCAGCCTGGAGGTGGGGATGCCGGTG
GAAATCCTCGACTGA
Translation:
MFRLSALYRYPIKSSAAESLERVALDALGVVGDRRWMAVDTETGRFFTQRLLPQLGRIQARWAAPEVLRLNA
PGMSELSLEVPAADANLRGVTVWRDTLQAPDAGDAAADWLTRFLGRPTRLVHIPEARARQVDTGYAEPGQKV
HFADGFPLLLIGQASLDDLSQRVGRPLEMLRFRPNLVVEGSAAFAEDGWKRIRIGSVEFVVAKPCSRCILTT
LDPATGERNEDREPLTTLKTYREKDGAVLFGQNLIALGQGSLEVGMPVEILD*
AnnotationID:2961GeneID:2953
AnnotatorUID: diggins
Modification Date/Time: 2005-04-11 19:07:27
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA3022
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:5909




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23051




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36030




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2953_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2953
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4777
                           PA3022_tr
                           translation of PA3022
                           268
                           99.99
                           99.99
                           0
                           1373.0
     

     
     
136730
                           gb|AAG06410.1|AE004727_6
                           (AE004727) hypothetical protein PA3022 [Pseudomonas aeruginosa PAO1]
                           268
                           99.99
                           99.99
                           0
                           1373.0
     

     
     
136731
                           gb|AAO56998.1|
                           (AE016868) MOSC domain protein [Pseudomonas syringae pv. tomato str. DC3000]
                           269
                           62.82
                           78.81
                           1
                           922.0
     

     
     
136732
                           gb|AAN67742.1|AE016405_5
                           (AE016782) conserved hypothetical protein [Pseudomonas putida KT2440]
                           268
                           61.94
                           72.76
                           1
                           837.0
     

     
     
136733
                           emb|CAB96007.1|
                           (AL939107) conserved hypothetical protein SCG20A.02 [Streptomyces coelicolor A3(2)]
                           284
                           45.07
                           59.50
                           25
                           553.0
     

     






      

          
GC ORFID: 45955How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3022Glimmer Score: 

          
Start: 2769755Stop: 2768949

          
Length: 807


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3022 translation of PA3022Homolog Bit Score 533.0

          
Other Homologs:  psyr_15may02_Scaffold9_revised_gene8039 (ORF: BLASTX 355.0), t_PA3022 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTTCCGTCTCTCCGCGCTGTACCGCTATCCGATCAAGTCTTCCGCCGCCGAGTCCCTGGAGCGCGTCGCG 
CTCGATGCGCTGGGCGTGGTCGGCGACCGACGCTGGATGGCGGTGGACACCGAAACCGGACGTTTCTTCACC 
CAGCGCCTGCTGCCGCAGCTGGGGCGTATCCAGGCGCGCTGGGCGGCGCCGGAGGTCCTGCGGCTGAATGCG 
CCGGGGATGTCCGAGCTGAGCCTCGAAGTACCGGCAGCCGACGCCAACCTGCGTGGCGTCACGGTCTGGCGC 
GATACCTTGCAGGCGCCGGATGCCGGCGACGCCGCAGCGGACTGGCTGACGCGCTTCCTCGGCCGCCCGACG 
CGCCTGGTGCACATTCCCGAGGCGCGCGCGCGGCAGGTCGATACCGGCTACGCCGAGCCGGGGCAGAAGGTG 
CATTTCGCCGACGGTTTCCCGCTGCTGCTGATCGGCCAGGCTTCGCTCGACGACCTCAGCCAGCGGGTCGGC 
CGGCCGTTGGAGATGCTGCGCTTCCGTCCCAACCTGGTGGTGGAAGGCAGCGCCGCGTTCGCCGAGGACGGC 
TGGAAACGCATCCGCATCGGCTCGGTCGAGTTCGTCGTGGCCAAGCCCTGTTCCCGCTGCATCCTCACCACC 
CTGGATCCGGCGACCGGCGAGCGCAACGAGGACCGCGAGCCGCTGACGACCCTGAAGACCTACCGGGAAAAG 
GATGGCGCGGTGCTGTTCGGGCAGAACCTGATTGCGCTAGGACAGGGCAGCCTGGAGGTGGGGATGCCGGTG 
GAAATCCTCGACTGA