ViewGene

Locus Name:
GeneID:
Location:

GeneID:2952
TrivialName: PA14_30580
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_30580
PAO1 Ortholog Locus:PA2591
Sequence Length:807
Protein Length:268
Start: 2647547
Stop: 2648353
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05979.1|AE004688_1 (AE004688) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 265/268 (98%), Positives = 266/268 (99%)
Sequence:
GTGGATATCGCATTGCACGGCGGCGCCTGGCACGAGTCACTGGGAAAGTTGCTCGAAGCGCTGGACCGGCCG
TTCTTCTGGCGGATCCTGGCGCAGACCCTCGGCCAGTTCGCCCCCGTCGACAACTGGGCGGCCCTGATATTC
AGCGACTCCAGCCCCTTGATTCTTTCCTTCATGGAAGAGGAGATAGAAGAAATCGAGCCGGACCCGCTGATC
AGTCGATATATAACCGGACTCTATCTGCAAGATCCTTTCTACCAGGTATCCAGAAACTGTCGGCGCGGCGGG
CTTTTTCATCTTGCGGATATCGTCTCCGAAGATTTCGAAACGACCGAGTATTACAATGCGTACTTTGCGCAT
TATGTGGTGACGGACGAAGTTCAATATAACGTCCCGCTGGATGGTGAAAGAACCCTATGCCTGTCGTTGGGC
AGCGAGAGCCGCTTCGGTGCCGAGCAGATCGCGCTGTTCGAGCTGCTTCGCCCGTGGGTCATCGCGCTGATG
AAAAAACGCATCCACTTCGAGGATGCGGTCAGGGAGGAGGCGAAACCGATCGCAGCGGCGGAGGTGGAAGTC
CAGCCCTGGAGAGGGTTGATATCGCCGCTGACCGCGCGGGAGTCGGATGTCATCCGGCTGATGCTGGATGGA
TACTCGAACAAGGAAATAGCGGATCGGCTGACGCTGTCGATCGCCACCATCAAGGTGCATCGCCGGCATATC
TACGCGAAGCTGAACGTGAAGTCCCACTCCGAGATATTCGCGCTATTGATCAACCCGCCCGCGCCGCGGCTC
GCCGACGCACGCTAG
Translation:
MDIALHGGAWHESLGKLLEALDRPFFWRILAQTLGQFAPVDNWAALIFSDSSPLILSFMEEEIEEIEPDPLI
SRYITGLYLQDPFYQVSRNCRRGGLFHLADIVSEDFETTEYYNAYFAHYVVTDEVQYNVPLDGERTLCLSLG
SESRFGAEQIALFELLRPWVIALMKKRIHFEDAVREEAKPIAAAEVEVQPWRGLISPLTARESDVIRLMLDG
YSNKEIADRLTLSIATIKVHRRHIYAKLNVKSHSEIFALLINPPAPRLADAR*
AnnotationID:2960GeneID:2952
AnnotatorUID: diggins
Modification Date/Time: 2005-03-07 08:08:45
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator, LuxR family
Cell Localization:()
Synonyms:PA2591
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:smart00421,pfam00196
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN69441.1|AE016579_12 (AE016788) transcriptional regulator, LuxR family [Pseudomonas
           putida KT2440]
          Length = 265

 Score =  238 bits (607), Expect = 3e-62
 Identities = 129/261 (49%), Positives = 168/261 (64%), Gaps = 10/261 (3%)

Structural Features:
smart00421, HTH_LUXR, helix_turn_helix, Lux Regulon
CD-Length = 58 residues,  96.6% aligned
Score = 69.0 bits (169), Expect = 5e-13
Identities = 25/56 (44%), Positives = 38/56 (67%)

pfam00196, GerE, Bacterial regulatory proteins, luxR family.
CD-Length = 58 residues, 100.0% aligned
Score = 68.7 bits (168), Expect = 7e-13
Identities = 29/58 (50%), Positives = 38/58 (65%)
Genomic Context:
Comment:
ReferenceID:14705
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:23049
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:33151
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:2952_cdd.html
URL:
Homologs By Global Alignment
Gene ID:2952

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
4775 PA2591_tr translation of PA2591 268 98.88 99.25 0 1373.0
136727 gb|AAG05979.1|AE004688_1 (AE004688) probable transcriptional regulator [Pseudomonas aeruginosa PAO1] 268 98.50 99.25 0 1370.0
4776 PA3599_tr translation of PA3599 278 47.12 59.35 27 615.0
136729 gb|AAG06987.1|AE004780_6 (AE004780) probable transcriptional regulator [Pseudomonas aeruginosa PAO1] 278 47.12 59.35 27 615.0
136728 gb|AAN69441.1|AE016579_12 (AE016788) transcriptional regulator, LuxR family [Pseudomonas putida KT2440] 278 46.40 61.15 23 612.0
GC ORFID: 45954How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA2591Glimmer Score:
Start: 2306379Stop: 2305573
Length: 807
Start Codon: GTGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: t_PA2591 translation of PA2591Homolog Bit Score 533.0
Other Homologs: t_PA3599 (ORF: BLASTX 236.0), t_PA2591 (ORF: GLIMMER)
GC ORF Sequence
GTGGATATCGCATTGCACGGCGGCGCCTGGCACGAGTCACTGGGAAAGTTGCTCGAAGCGCTGGACCGGCCG
TTCTTCTGGCGGATCCTGGCGCAGACCCTCGGCCAGTTCGCCCCCGTCGACAACTGGGCGGCCCTGATATTC
AGCGACTCCAGCCCCTTGATTCTTTCCTTCATGGAAGAGGAGATAGAAGAAATCGAGCCGGACCCGCTGATC
AGTCGATATATAACCGGACTCTATCTGCAAGATCCTTTCTACCAGGTATCCAGAAACTGTCGGCGCGGCGGG
CTTTTTCATCTTGCGGATATCGTCTCCGAAGATTTCGAAACGACCGAGTATTACAATGCGTACTTTGCGCAT
TATGTGGTGACGGACGAAGTTCAATATAACGTCCCGCTGGATGGTGAAAGAACCCTATGCCTGTCGTTGGGC
AGCGAGAGCCGCTTCGGTGCCGAGCAGATCGCGCTGTTCGAGCTGCTTCGCCCGTGGGTCATCGCGCTGATG
AAAAAACGCATCCACTTCGAGGATGCGGTCAGGGAGGAGGCGAAACCGATCGCAGCGGCGGAGGTGGAAGTC
CAGCCCTGGAGAGGGTTGATATCGCCGCTGACCGCGCGGGAGTCGGATGTCATCCGGCTGATGCTGGATGGA
TACTCGAACAAGGAAATAGCGGATCGGCTGACGCTGTCGATCGCCACCATCAAGGTGCATCGCCGGCATATC
TACGCGAAGCTGAACGTGAAGTCCCACTCCGAGATATTCGCGCTATTGATCAACCCGCCCGCGCCGCGGCTC
GCCGACGCACGCTAG