ViewGene
Locus Name:
GeneID:
Location:

GeneID:2951
TrivialName: PA14_45010
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_45010
PAO1 Ortholog Locus:PA1501
Sequence Length:783
Protein Length:260
Start: 4014009
Stop: 4014791
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04890.1|AE004579_2 (AE004579) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 260/260 (100%), Positives = 260/260 (100%)
Sequence:
ATGCCCCGTTTCTGCGCCAACCTGTCCATGCTGTTCACCGAGGTGGATTTCCTCGAACGCTTCGACGCCGCC
GCCAAGGCCGGCTTCGCCGGCGTCGAGTACCTCTTCCCCTATGACGTCGAGGCCGAGGCGATCAAGGCCCGC
CTGGAAGCCAACGGCCTGGAACAGGTGCTGTTCAACCTGCCGGCCGGCGACTGGGCCAAGGGCGAGCGCGGC
ATCGCCTGCCACCCGGATCGGGTCCAGGAGTTCCGCGAGGGGGTCGACAAGGCCATCGCCTACGCCAGGGTG
CTGGGCAACCGCCAGGTGAACTGCCTCGCCGGGATCCGGCCGCAGGGGCACGACTGCGCCAGCGTCGAGAAG
ACCTTCGTCGACAACCTGCGCTACGCCGCCGACAAGCTGGAAGCCGCAGGCATCCGCCTGGTCATGGAGATG
ATCAACACCCTCGACATCCCCGGCTTCTACCTGCAGAACACCCGCCAGGCCCTGGAGATCCGCGACAAGGTC
GGCAGCGCCAACCTGTTCCTGCAATACGACATCTATCACATGCAGATCATGGAAGGCGACCTGGCCCGCACC
CTGGAAAACCAGTTGGCGGCGATCAACCACGTGCAACTCGCCGACAACCCCGGCCGCCACGAACCGGGCACC
GGCGAGATCAACTACCGCTTCCTCTTCGAGCACCTGGACCGCATCGGCTACCAGGGCTGGATCGGCTGCGAG
TACAAGCCGGCCACCACCACCGAAGCCGGCCTCGGCTGGATGAAGACGCACAACGTCGTCTGA
Translation:
MPRFCANLSMLFTEVDFLERFDAAAKAGFAGVEYLFPYDVEAEAIKARLEANGLEQVLFNLPAGDWAKGERG
IACHPDRVQEFREGVDKAIAYARVLGNRQVNCLAGIRPQGHDCASVEKTFVDNLRYAADKLEAAGIRLVMEM
INTLDIPGFYLQNTRQALEIRDKVGSANLFLQYDIYHMQIMEGDLARTLENQLAAINHVQLADNPGRHEPGT
GEINYRFLFEHLDRIGYQGWIGCEYKPATTTEAGLGWMKTHNVV*
AnnotationID:2959GeneID:2951
AnnotatorUID: diggins
Modification Date/Time: 2005-05-30 07:07:32
Gene Name:
Confidence Code:3
GeneProduct:putative hydroxypyruvate isomerase
Cell Localization:()
Synonyms:hyi
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(8) Central intermediary metabolism
Alternate Gene Product Name:putative glyoxylate-induced protein
Functional Category Confidence Code:5
COGs:COG3622
Secondary Functional Category(ies):carbon compound metabolism
EC Number:5.3.1.22
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN69878.1|AE016626_13 (AE016790) hydroxypyruvate isomerase [Pseudomonas putida KT2440]
          Length = 260

 Score =  441 bits (1134), Expect = e-123
 Identities = 212/260 (81%), Positives = 229/260 (88%)

>dbj|BAC48432.1| (AP005946) hyi [Bradyrhizobium japonicum USDA 110]
          Length = 261

 Score =  333 bits (855), Expect = 5e-91
 Identities = 162/253 (64%), Positives = 192/253 (75%)

>gb|AAL61906.1| (AF289032) putative regulatory protein GclR [Escherichia coli]
          Length = 260

 Score =  325 bits (833), Expect = 2e-88
 Identities = 156/255 (61%), Positives = 190/255 (74%)








 
Structural Features:
COG3622, Hfi, Hydroxypyruvate isomerase 
[Carbohydrate transport and metabolism]
CD-Length = 260 residues, 100.0% aligned
Score =  415 bits (1068), Expect = 3e-117
Identities = 171/260 (65%), Positives = 199/260 (76%)






   
Genomic Context:






   
Comment:
other possible gene name: gip


















    ReferenceID:5905




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23047




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37340




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2951_cdd.html


    		




 
URL:

















    ReferenceID:38179




  
Author/Investigator(s):
        Ashiuchi M, Misono H.





  
Title:
        Biochemical evidence that Escherichia coli hyi (orf b0508, gip) gene encodes hydroxypyruvate isomerase.




  
PubMed:
        10561547


MedLine:
        




    
Source:
Biochim Biophys Acta. 1999 Nov 16;1435(1-2):153-9.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=10561547&query_hl=3









           
Homologs By Global Alignment 

           

       



     
Gene ID:2951
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4773
                           PA1501_tr
                           translation of PA1501
                           260
                           99.99
                           99.99
                           0
                           1374.0
     

     
     
136684
                           gb|AAG04890.1|AE004579_2
                           (AE004579) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           260
                           99.99
                           99.99
                           0
                           1374.0
     

     
     
136685
                           gb|AAN69878.1|AE016626_13
                           (AE016790) hydroxypyruvate isomerase [Pseudomonas putida KT2440]
                           260
                           81.53
                           88.07
                           0
                           1134.0
     

     
     
136686
                           dbj|BAB47878.1|
                           (AP002994) hypothetical protein [Mesorhizobium loti]
                           267
                           66.29
                           76.40
                           9
                           925.0
     

     
     
136687
                           dbj|BAC48432.1|
                           (AP005946) hyi [Bradyrhizobium japonicum USDA 110]
                           261
                           62.06
                           73.56
                           1
                           849.0
     

     






      

          
GC ORFID: 45953How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1501Glimmer Score: 

          
Start: 939900Stop: 939118

          
Length: 783


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1501 translation of PA1501Homolog Bit Score 533.0

          
Other Homologs:  t_PA0550 (ORF: BLASTX 276.0), psyr_15may02_Scaffold2_revised_gene3732 (ORF: BLASTX 262.0), t_PA1501 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCCCGTTTCTGCGCCAACCTGTCCATGCTGTTCACCGAGGTGGATTTCCTCGAACGCTTCGACGCCGCC 
GCCAAGGCCGGCTTCGCCGGCGTCGAGTACCTCTTCCCCTATGACGTCGAGGCCGAGGCGATCAAGGCCCGC 
CTGGAAGCCAACGGCCTGGAACAGGTGCTGTTCAACCTGCCGGCCGGCGACTGGGCCAAGGGCGAGCGCGGC 
ATCGCCTGCCACCCGGATCGGGTCCAGGAGTTCCGCGAGGGGGTCGACAAGGCCATCGCCTACGCCAGGGTG 
CTGGGCAACCGCCAGGTGAACTGCCTCGCCGGGATCCGGCCGCAGGGGCACGACTGCGCCAGCGTCGAGAAG 
ACCTTCGTCGACAACCTGCGCTACGCCGCCGACAAGCTGGAAGCCGCAGGCATCCGCCTGGTCATGGAGATG 
ATCAACACCCTCGACATCCCCGGCTTCTACCTGCAGAACACCCGCCAGGCCCTGGAGATCCGCGACAAGGTC 
GGCAGCGCCAACCTGTTCCTGCAATACGACATCTATCACATGCAGATCATGGAAGGCGACCTGGCCCGCACC 
CTGGAAAACCAGTTGGCGGCGATCAACCACGTGCAACTCGCCGACAACCCCGGCCGCCACGAACCGGGCACC 
GGCGAGATCAACTACCGCTTCCTCTTCGAGCACCTGGACCGCATCGGCTACCAGGGCTGGATCGGCTGCGAG 
TACAAGCCGGCCACCACCACCGAAGCCGGCCTCGGCTGGATGAAGACGCACAACGTCGTCTGA