ViewGene
Locus Name:
GeneID:
Location:

GeneID:2950
TrivialName: PA14_51680
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_51680
PAO1 Ortholog Locus:PA0975
Sequence Length:795
Protein Length:264
Start: 4592722
Stop: 4591928
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04364.1|AE004531_1 (AE004531) probable radical activating enzyme [Pseudomonas aeruginosa PAO1]
Identities = 260/264 (98%), Positives = 260/264 (98%)
Sequence:
ATGGTTTCAGCTCGGCTGATCTTCGTGCCTCTCCTCGCGAGACCTTCCGGGATTTCGAGTGCCACGACAGGA
TACGTTCCGTGGCGCCCCTTCATTTACCGCAACGGAGGCGGACGACCTGTTCAGTCGTCACGCCCGTGGCTG
AATATGCAACAGACCCTGCGCATCACCGAGATTTTCTACTCGTTGCAGGGGGAAACACGTACCGCCGGCTTG
CCGACGGTCTTCGTGCGCCTGACCGGCTGCCCCCTGCGCTGTCACTATTGCGATACCGCCTATGCCTTCAGC
GGCGGCGACGTCGTTAGCCTGGACGCTATTCTCGAGCGGGTTGCCACCTACAAGCCTCGCTACATCTGCGTG
ACCGGCGGGGAGCCGCTGGCCCAGCCGAATTGCATTTCTCTGCTGGAGCGGCTTTGCGACGCCGGCTACGAG
GTTTCCCTGGAAACCAGCGGGGCCCTCGATGTGTCACGGGTCGACCCGCGCGTAAGCAAGGTTCTCGACCTC
AAGACGCCGGGATCTGGCGAGGTCGGACGCAACCGATACGAAAATATCCCGTTGCTGACCGACAACGATCAG
GTGAAGTTTGTCGTCTGTTCGCGAGAGGACTACGACTGGGCGGTATCCAAGCTGATCGAGTACCGCCTCGAC
CAGCGTGCCGGTGAAGTCCTGTTCTCGCCGAGCCACCATCAGGTCAGCGCGCGAGAACTGGCCGATTGGATC
GTGGCCGACAACCTGCCGGTCCGCCTGCAATTGCAACTGCACAAGATTCTCTGGAACGACGAACCGGGCCAT
TGA
Translation:
MVSARLIFVPLLARPSGISSATTGYVPWRPFIYRNGGGRPVQSSRPWLNMQQTLRITEIFYSLQGETRTAGL
PTVFVRLTGCPLRCHYCDTAYAFSGGDVVSLDAILERVATYKPRYICVTGGEPLAQPNCISLLERLCDAGYE
VSLETSGALDVSRVDPRVSKVLDLKTPGSGEVGRNRYENIPLLTDNDQVKFVVCSREDYDWAVSKLIEYRLD
QRAGEVLFSPSHHQVSARELADWIVADNLPVRLQLQLHKILWNDEPGH*
AnnotationID:2958GeneID:2950
AnnotatorUID: danlee
Modification Date/Time: 2004-05-12 13:01:39
Gene Name:
Confidence Code:3
GeneProduct:probable radical activating enzyme
Cell Localization:()
Synonyms:PA0975
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0602
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG0602, NrdG, Organic radical activating enzymes [Posttranslational modification, 
protein turnover, chaperones]
       CD-Length = 212 residues, 100.0% aligned
       Score =  169 bits (430), Expect = 3e-43






   
Genomic Context:






   
Comment:


















    ReferenceID:5903




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23045




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2950
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4772
                           PA0975_tr
                           translation of PA0975
                           264
                           98.48
                           98.48
                           0
                           1372.0
     

     
     
136673
                           gb|AAG04364.1|AE004531_1
                           (AE004531) probable radical activating enzyme [Pseudomonas aeruginosa PAO1]
                           264
                           98.48
                           98.48
                           0
                           1372.0
     

     
     
136674
                           gb|AAO57428.1|
                           (AE016870) radical SAM domain protein [Pseudomonas syringae pv. tomato str. DC3000]
                           264
                           66.28
                           75.00
                           49
                           951.0
     

     
     
136675
                           gb|AAN66849.1|AE016313_8
                           (AE016778) radical activating enzyme [Pseudomonas putida KT2440]
                           264
                           66.28
                           73.48
                           49
                           942.0
     

     
     
136676
                           emb|CAB50782.1|
                           (X74218) hypothetical protein [Pseudomonas putida]
                           264
                           66.28
                           73.48
                           49
                           942.0
     

     






      

          
GC ORFID: 45952How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0975Glimmer Score: 

          
Start: 361185Stop: 361979

          
Length: 795


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0975 translation of PA0975Homolog Bit Score 533.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene4696 (ORF: BLASTX 371.0), t_PA0975 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGTTTCAGCTCGGCTGATCTTCGTGCCTCTCCTCGCGAGACCTTCCGGGATTTCGAGTGCCACGACAGGA 
TACGTTCCGTGGCGCCCCTTCATTTACCGCAACGGAGGCGGACGACCTGTTCAGTCGTCACGCCCGTGGCTG 
AATATGCAACAGACCCTGCGCATCACCGAGATTTTCTACTCGTTGCAGGGGGAAACACGTACCGCCGGCTTG 
CCGACGGTCTTCGTGCGCCTGACCGGCTGCCCCCTGCGCTGTCACTATTGCGATACCGCCTATGCCTTCAGC 
GGCGGCGACGTCGTTAGCCTGGACGCTATTCTCGAGCGGGTTGCCACCTACAAGCCTCGCTACATCTGCGTG 
ACCGGCGGGGAGCCGCTGGCCCAGCCGAATTGCATTTCTCTGCTGGAGCGGCTTTGCGACGCCGGCTACGAG 
GTTTCCCTGGAAACCAGCGGGGCCCTCGATGTGTCACGGGTCGACCCGCGCGTAAGCAAGGTTCTCGACCTC 
AAGACGCCGGGATCTGGCGAGGTCGGACGCAACCGATACGAAAATATCCCGTTGCTGACCGACAACGATCAG 
GTGAAGTTTGTCGTCTGTTCGCGAGAGGACTACGACTGGGCGGTATCCAAGCTGATCGAGTACCGCCTCGAC 
CAGCGTGCCGGTGAAGTCCTGTTCTCGCCGAGCCACCATCAGGTCAGCGCGCGAGAACTGGCCGATTGGATC 
GTGGCCGACAACCTGCCGGTCCGCCTGCAATTGCAACTGCACAAGATTCTCTGGAACGACGAACCGGGCCAT 
TGA