ViewGene
Locus Name:
GeneID:
Location:

GeneID:295
TrivialName: PA14_08050
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_08050
PAO1 Ortholog Locus:PA0620
Sequence Length:2076
Protein Length:691
Start: 691511
Stop: 693586
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04009.1|AE004498_4 (AE004498) probable bacteriophage protein [Pseudomonas aeruginosa PAO1]
Identities = 687/691 (99%), Positives = 688/691 (99%)
Sequence:
ATGACGACCAATACTCCGAAATACGGTGGCCTGCTCACCGACATAGGTGCCGCTGCGCTGGCTGCGGCCAGC
GCAGCAGGCAAGAAATGGCAGCCGACTCATATGCTGATCGGCGATGCTGGCGGTGCGCCGGGCGACACGCCG
GATCCATTGCCTTCGGTGGCGCAGAAGAGCCTGATCAACCAACGCCATCGGGCCCAGCTGAATCGGCTGTTC
GTTTCCGACAAGAACGCCAATACCTTGGTTGCCGAGGTGGTGCTTCCAGTTGAGGTAGGTGGCTTCTGGATC
CGCGAGATCGGCCTGCAGGATGCCGACGGCAAGTTCGTCGCGGTATCCAACTGCCCGCCCAGCTACAAGGCT
GCGATGGAAAGTGGCAGTGCGCGGACCCAGACCATTCGGGTGAACATCGCGCTCTCCGGCCTGGAGAATGTC
CAGCTGCTGATCGACAACGGCATCATCTACGCCACTCAGGACTGGGTGAAGGAAAAGGTCGCTGCCGATTTC
AAGGGCCGCAAGATCCTGGCTGGCAATGGCTTGGTCGGTGGGGGCGATCTTTCTGCCGACCGCAGCATTGGC
CTGGCGCCTTCCGGCGTGACGGCGGGCAGCTATCGCTCGGTCACGGTGAACGCCAACGGGGTGGTCACCCAG
GGCAGCAATCCGACCACCCTGGCCGGCTATGCGATCGGAGATGCCTATACCAAGGCCGATACCGACGGAAAA
CTGGCGCAGAAAGCGAACAAGGCCACCACCCTGGCCGGCTATGGCATCACCGATGCGCTGCGAGTCGATGGC
AACGCCGTGTCATCCAGCAGGCTGGCCGCACCGCGCAGCCTGGCAGCCAGTGGCGATGCCTCCTGGTCGGTG
ACCTTCGACGGCAGTGCCAATGTTTCTGCGCCGCTGAGTCTTTCCGCTACCGGTGTGGCGGCGGGCAGCTAT
CCGAAGGTGACCGTGGATACGAAGGGAAGGGTGACTGCTGGAATGACGCTGGCGGCGACGGACATTCCCGGG
CTGGATGCGTCGAAGCTGGTCAGCGGGGTGCTGGCCGAGCAGCGTTTGCCGGTATTCGCGCGCGGGTTGGCT
ACTGCTGTCTCGAACAGTAGCGATCCGAACACCGCGACCGTGCCGTTGATGCTGACCAATCATGCGAACGGA
CCTGTTGCCGGACGATACTTCTACATCCAGTCGATGTTCTATCCGGATCAGAACGGCAATGCTTCGCAGATT
GCAACGAGCTACAACGCTACATCCGAGATGTATGTACGGGTGTCCTACGCGGCCAACCCTAGCATCCGGGAG
TGGTTGCCCTGGCAGCGCTGCGACATTGGAGGTTCCTTCACCAAAGAGGCCGATGGTGAACTGCCTGGAGGC
GTCAACCTGGATTCGATGGTGACCTCAGGGTGGTGGAGCCAGAGTTTTACTGCCCAAGCTGCCAGTGGAGCC
AACTACCCTATAGTTCGGGCCGGCCTGCTTCATGTGTACGCCGCGAGTAGCAATTTCATCTATCAGACGTAT
CAAGCCTACGATGGTGAGAGTTTCTATTTCCGGTGCCGGCATTCAAATACCTGGTTTCCCTGGCGTCGCATG
TGGCATGGCGGAGACTTCAACCCCAGTGACTATCTGTTGAAGTCGGGGTTCTATTGGAATGCGTTACCGGGA
AAACCTGCCACTTTTCCACCATCTGCACATAACCATGACGTCGGACAGCTTACTTCGGGCATTCTCCCCCTG
GCACGTGGCGGCGTCGGTTCGAATACGGCAGCGGGAGCACGTAGCACTATCGGAGCAGGGGTTCCTGCGACT
GCTTCCCTTGGGGCGAGCGGATGGTGGCGGGACAATGACACTGGCCTCATTAGGCAATGGGGGCAGGTCACT
TGCCCCGCCGATGCCGATGCTTCGATTACGTTCCCGATTCCTTTCCCTACGCTATGCCTCGGCGGATATGCG
AATCAGACGAGTGCTTTCCATCCGGGAACGGATGCCAGTACAGGTTTCCGTGGAGCGACTACCACTACCGCG
GTGATTCGCAATGGCTACTTTGCTCAGGCGGTTCTTTCATGGGAGGCATTTGGACGATGA
Translation:
MTTNTPKYGGLLTDIGAAALAAASAAGKKWQPTHMLIGDAGGAPGDTPDPLPSVAQKSLINQRHRAQLNRLF
VSDKNANTLVAEVVLPVEVGGFWIREIGLQDADGKFVAVSNCPPSYKAAMESGSARTQTIRVNIALSGLENV
QLLIDNGIIYATQDWVKEKVAADFKGRKILAGNGLVGGGDLSADRSIGLAPSGVTAGSYRSVTVNANGVVTQ
GSNPTTLAGYAIGDAYTKADTDGKLAQKANKATTLAGYGITDALRVDGNAVSSSRLAAPRSLAASGDASWSV
TFDGSANVSAPLSLSATGVAAGSYPKVTVDTKGRVTAGMTLAATDIPGLDASKLVSGVLAEQRLPVFARGLA
TAVSNSSDPNTATVPLMLTNHANGPVAGRYFYIQSMFYPDQNGNASQIATSYNATSEMYVRVSYAANPSIRE
WLPWQRCDIGGSFTKEADGELPGGVNLDSMVTSGWWSQSFTAQAASGANYPIVRAGLLHVYAASSNFIYQTY
QAYDGESFYFRCRHSNTWFPWRRMWHGGDFNPSDYLLKSGFYWNALPGKPATFPPSAHNHDVGQLTSGILPL
ARGGVGSNTAAGARSTIGAGVPATASLGASGWWRDNDTGLIRQWGQVTCPADADASITFPIPFPTLCLGGYA
NQTSAFHPGTDASTGFRGATTTTAVIRNGYFAQAVLSWEAFGR*
AnnotationID:305GeneID:295
AnnotatorUID: diggins
Modification Date/Time: 2005-03-29 13:01:18
Gene Name:
Confidence Code:3
GeneProduct:putative tail fiber protein
Cell Localization:()
Synonyms:PA0620
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(22) Related to phage, transposon, or plasmid
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG5301
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAD09452.1| (AL627279) probable variable tail fibre protein [Salmonella
           enterica subsp. enterica serovar Typhi]
          Length = 504

 Score =  144 bits (363), Expect = 2e-33
 Identities = 71/158 (44%), Positives = 102/158 (64%), Gaps = 5/158 (3%)

>gb|AAN79441.1|AE016758_45 (AE016758) Probable variable tail fibre protein [Escherichia coli
           CFT073]
          Length = 479

 Score =  143 bits (360), Expect = 4e-33
 Identities = 71/157 (45%), Positives = 101/157 (64%), Gaps = 5/157 (3%)






 
Structural Features:
COG5301, Phage-related tail fibre protein 
CD-Length = 587 residues, 100.0% aligned
Score =  611 bits (1577), Expect = 7e-176
Identities = 426/672 (63%), Positives = 456/672 (67%), Gaps = 85/672 (12%)






   
Genomic Context:






   
Comment:


















    ReferenceID:593




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17735




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33882




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:295_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:295
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
485
                           PA0620_tr
                           translation of PA0620
                           691
                           99.42
                           99.56
                           0
                           3596.0
     

     
     
24822
                           gb|AAG04009.1|AE004498_4
                           (AE004498) probable bacteriophage protein [Pseudomonas aeruginosa PAO1]
                           691
                           99.42
                           99.56
                           0
                           3596.0
     

     
     
24823
                           dbj|BAA83158.1|
                           (AB030825) PRF15~similar to H genes of P2 and phiCTX: tail fiber [Pseudomonas aeruginosa]
                           691
                           99.42
                           99.56
                           0
                           3596.0
     

     
     
24824
                           dbj|BAB03228.1|
                           (AB046380) tail fiber protein [Pseudomonas aeruginosa]
                           708
                           81.35
                           85.45
                           24
                           2919.0
     

     
     
24830
                           emb|CAD06733.1|
                           (AL627283) probable phage tail fibre protein [Salmonella enterica subsp. enterica serovar Typhi]
                           740
                           24.45
                           35.67
                           250
                           460.0
     

     






      

          
GC ORFID: 43297How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0620Glimmer Score: 

          
Start: 6492854Stop: 6494929

          
Length: 2076


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0620 translation of PA0620Homolog Bit Score 1389.0

          
Other Homologs:  t_PA0620 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACGACCAATACTCCGAAATACGGTGGCCTGCTCACCGACATAGGTGCCGCTGCGCTGGCTGCGGCCAGC 
GCAGCAGGCAAGAAATGGCAGCCGACTCATATGCTGATCGGCGATGCTGGCGGTGCGCCGGGCGACACGCCG 
GATCCATTGCCTTCGGTGGCGCAGAAGAGCCTGATCAACCAACGCCATCGGGCCCAGCTGAATCGGCTGTTC 
GTTTCCGACAAGAACGCCAATACCTTGGTTGCCGAGGTGGTGCTTCCAGTTGAGGTAGGTGGCTTCTGGATC 
CGCGAGATCGGCCTGCAGGATGCCGACGGCAAGTTCGTCGCGGTATCCAACTGCCCGCCCAGCTACAAGGCT 
GCGATGGAAAGTGGCAGTGCGCGGACCCAGACCATTCGGGTGAACATCGCGCTCTCCGGCCTGGAGAATGTC 
CAGCTGCTGATCGACAACGGCATCATCTACGCCACTCAGGACTGGGTGAAGGAAAAGGTCGCTGCCGATTTC 
AAGGGCCGCAAGATCCTGGCTGGCAATGGCTTGGTCGGTGGGGGCGATCTTTCTGCCGACCGCAGCATTGGC 
CTGGCGCCTTCCGGCGTGACGGCGGGCAGCTATCGCTCGGTCACGGTGAACGCCAACGGGGTGGTCACCCAG 
GGCAGCAATCCGACCACCCTGGCCGGCTATGCGATCGGAGATGCCTATACCAAGGCCGATACCGACGGAAAA 
CTGGCGCAGAAAGCGAACAAGGCCACCACCCTGGCCGGCTATGGCATCACCGATGCGCTGCGAGTCGATGGC 
AACGCCGTGTCATCCAGCAGGCTGGCCGCACCGCGCAGCCTGGCAGCCAGTGGCGATGCCTCCTGGTCGGTG 
ACCTTCGACGGCAGTGCCAATGTTTCTGCGCCGCTGAGTCTTTCCGCTACCGGTGTGGCGGCGGGCAGCTAT 
CCGAAGGTGACCGTGGATACGAAGGGAAGGGTGACTGCTGGAATGACGCTGGCGGCGACGGACATTCCCGGG 
CTGGATGCGTCGAAGCTGGTCAGCGGGGTGCTGGCCGAGCAGCGTTTGCCGGTATTCGCGCGCGGGTTGGCT 
ACTGCTGTCTCGAACAGTAGCGATCCGAACACCGCGACCGTGCCGTTGATGCTGACCAATCATGCGAACGGA 
CCTGTTGCCGGACGATACTTCTACATCCAGTCGATGTTCTATCCGGATCAGAACGGCAATGCTTCGCAGATT 
GCAACGAGCTACAACGCTACATCCGAGATGTATGTACGGGTGTCCTACGCGGCCAACCCTAGCATCCGGGAG 
TGGTTGCCCTGGCAGCGCTGCGACATTGGAGGTTCCTTCACCAAAGAGGCCGATGGTGAACTGCCTGGAGGC 
GTCAACCTGGATTCGATGGTGACCTCAGGGTGGTGGAGCCAGAGTTTTACTGCCCAAGCTGCCAGTGGAGCC 
AACTACCCTATAGTTCGGGCCGGCCTGCTTCATGTGTACGCCGCGAGTAGCAATTTCATCTATCAGACGTAT 
CAAGCCTACGATGGTGAGAGTTTCTATTTCCGGTGCCGGCATTCAAATACCTGGTTTCCCTGGCGTCGCATG 
TGGCATGGCGGAGACTTCAACCCCAGTGACTATCTGTTGAAGTCGGGGTTCTATTGGAATGCGTTACCGGGA 
AAACCTGCCACTTTTCCACCATCTGCACATAACCATGACGTCGGACAGCTTACTTCGGGCATTCTCCCCCTG 
GCACGTGGCGGCGTCGGTTCGAATACGGCAGCGGGAGCACGTAGCACTATCGGAGCAGGGGTTCCTGCGACT 
GCTTCCCTTGGGGCGAGCGGATGGTGGCGGGACAATGACACTGGCCTCATTAGGCAATGGGGGCAGGTCACT 
TGCCCCGCCGATGCCGATGCTTCGATTACGTTCCCGATTCCTTTCCCTACGCTATGCCTCGGCGGATATGCG 
AATCAGACGAGTGCTTTCCATCCGGGAACGGATGCCAGTACAGGTTTCCGTGGAGCGACTACCACTACCGCG 
GTGATTCGCAATGGCTACTTTGCTCAGGCGGTTCTTTCATGGGAGGCATTTGGACGATGA