ViewGene
Locus Name:
GeneID:
Location:

GeneID:2948
TrivialName: PA14_72220
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_72220
PAO1 Ortholog Locus:PA5472
Sequence Length:801
Protein Length:266
Start: 6434784
Stop: 6433984
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08857.1|AE004959_13 (AE004959) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 262/266 (98%), Positives = 264/266 (99%)
Sequence:
GTGCGGATGCGATTTGCGGGGATCAGTGGCTGCCTCTCGGCGGCGGTGTTGGCGCTCGGGGTAGGGGGAGCG
CCGGCGGTTCGGGCCGATGCGCTGGGCGATAGCCTGGAGCAGGCGCACATCCGCAAGGCGACCTTCGCCGCG
CCGGCCTGGGAAGGCTATACCAACGCCGACGGCAGCGGCCTGTACTGGGACCTGCTGAAGCAGGTCTATGCG
CCCTACGGGCTCGACGTGAAATTCATCAACATGCCCTGGAACCGCGCCAACAAGCTGATGACCGCGGGCTCC
ATGGTCGATGGCGTGCCGGGCGAGATCCCCGGCGTTGAGGGCAAGCTGTACGCCCAGTTGCCGATCGACATC
GAGTACCACGGCGTGATGCATGCGGCGAAGACGCCCTTTTCCGGCCGCGCCAGCCTCACCGGCAAGCGCGTC
GGCTGGCGCCACAGCTACAACCTGATCCCCGCGGAGCAGCGCGACTTCACCCTGGTCGAGTGCGTCCGCCCC
GAGCGTTGCACCGAGCAGGTCCAGAACGGCGAGCTGGATTTCTTCCTCGACGAGCCGGACGAACTGGAAAAG
CAGCGCAGCGAAGCGCACCTGGCGGCCGATGCCTATCCGATCGCGCAACTGCCGCCCGGCAAGGAGTCCTTC
ATGACCTTCGCCGACAGCGCCAGCGGCCGGCTCCTGCGCGAGGTCTATGACGCGCGGGTACGGCAGATGGCG
GCGTCCGGCGAGCTGCGGGCGCTCTACCAGCGCTGGAACAGCGAGGTGCCCGGCGCCGTGCAGGCCCTTTCG
GCGCAGTGA
Translation:
MRMRFAGISGCLSAAVLALGVGGAPAVRADALGDSLEQAHIRKATFAAPAWEGYTNADGSGLYWDLLKQVYA
PYGLDVKFINMPWNRANKLMTAGSMVDGVPGEIPGVEGKLYAQLPIDIEYHGVMHAAKTPFSGRASLTGKRV
GWRHSYNLIPAEQRDFTLVECVRPERCTEQVQNGELDFFLDEPDELEKQRSEAHLAADAYPIAQLPPGKESF
MTFADSASGRLLREVYDARVRQMAASGELRALYQRWNSEVPGAVQALSAQ*
AnnotationID:2956GeneID:2948
AnnotatorUID: diggins
Modification Date/Time: 2005-03-21 06:06:17
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA5472
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:14703




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23041




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34622




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2948_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2948
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4770
                           PA5472_tr
                           translation of PA5472
                           266
                           98.49
                           99.24
                           0
                           1373.0
     

     
     
136665
                           gb|AAG08857.1|AE004959_13
                           (AE004959) hypothetical protein PA5472 [Pseudomonas aeruginosa PAO1]
                           266
                           98.12
                           99.24
                           0
                           1370.0
     

     






      

          
GC ORFID: 45950How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5472Glimmer Score: 

          
Start: 5698473Stop: 5697673

          
Length: 801


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5472 translation of PA5472Homolog Bit Score 533.0

          
Other Homologs:  t_PA5472 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGCGGATGCGATTTGCGGGGATCAGTGGCTGCCTCTCGGCGGCGGTGTTGGCGCTCGGGGTAGGGGGAGCG 
CCGGCGGTTCGGGCCGATGCGCTGGGCGATAGCCTGGAGCAGGCGCACATCCGCAAGGCGACCTTCGCCGCG 
CCGGCCTGGGAAGGCTATACCAACGCCGACGGCAGCGGCCTGTACTGGGACCTGCTGAAGCAGGTCTATGCG 
CCCTACGGGCTCGACGTGAAATTCATCAACATGCCCTGGAACCGCGCCAACAAGCTGATGACCGCGGGCTCC 
ATGGTCGATGGCGTGCCGGGCGAGATCCCCGGCGTTGAGGGCAAGCTGTACGCCCAGTTGCCGATCGACATC 
GAGTACCACGGCGTGATGCATGCGGCGAAGACGCCCTTTTCCGGCCGCGCCAGCCTCACCGGCAAGCGCGTC 
GGCTGGCGCCACAGCTACAACCTGATCCCCGCGGAGCAGCGCGACTTCACCCTGGTCGAGTGCGTCCGCCCC 
GAGCGTTGCACCGAGCAGGTCCAGAACGGCGAGCTGGATTTCTTCCTCGACGAGCCGGACGAACTGGAAAAG 
CAGCGCAGCGAAGCGCACCTGGCGGCCGATGCCTATCCGATCGCGCAACTGCCGCCCGGCAAGGAGTCCTTC 
ATGACCTTCGCCGACAGCGCCAGCGGCCGGCTCCTGCGCGAGGTCTATGACGCGCGGGTACGGCAGATGGCG 
GCGTCCGGCGAGCTGCGGGCGCTCTACCAGCGCTGGAACAGCGAGGTGCCCGGCGCCGTGCAGGCCCTTTCG 
GCGCAGTGA