ViewGene

Locus Name:
GeneID:
Location:

GeneID:2947
TrivialName: PA14_64980
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_64980
PAO1 Ortholog Locus:PA4920
Sequence Length:828
Protein Length:275
Start: 5791079
Stop: 5791906
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08305.1|AE004905_3 (AE004905) NH3-dependent NAD synthetase [Pseudomonas aeruginosa PAO1]
Identities = 274/275 (99%), Positives = 275/275 (100%)
Sequence:
ATGCAACAGATCCAACGCGACATCGCCCAAGCCCTGCAGGTCCAGCCGCCGTTCCAGTCGGAGGCCGACGTG
CAGGCGCAGATCGCCCGGCGCATCGCCTTCATCCAGCAGTGCCTGAAGGATGCCGGGCTGAAGACCCTGGTG
CTGGGGATCAGCGGCGGCGTCGACTCGCTCACCGCCGGCCTGCTGGCCCAGCGCGCCGTCGAGCAACTGCGC
GAGCAGACCGGCGACCAGGCCTACCGCTTCATCGCCGTGCGCCTGCCCTACCAGGTGCAGCAGGACGAGGCC
GATGCCCAGGCCTCGCTGGCGACCATCCGCGCCGACGAAGAGCAGACCGTCAACATCGGTCCGTCGGTGAAA
GCCCTGGCGGAACAGCTGGAAGCCCTGGAAGGACTCGAGCCGGCGAAGAGCGACTTCGTCATCGGCAATATC
AAGGCGCGCATCCGCATGGTCGCCCAGTACGCCATCGCCGGCGCCCGCGGCGGCCTGGTGATCGGCACCGAC
CATGCCGCCGAGGCGGTCATGGGGTTCTTCACCAAGTTCGGCGACGGCGCCTGCGACCTGGCTCCGCTCAGC
GGCCTGGCCAAGCATCAGGTGCGCGCCCTCGCCCGCGCCCTCGGCGCTCCGGAGAACCTGGTGGAGAAGATC
CCCACCGCCGACCTCGAGGACCTGCGCCCCGGCCATCCGGACGAGGCTTCCCACGGCGTCACCTATGCCGAG
ATCGACGCCTTCCTGCACGGCCAGCCGCTGCGCGAGGAAGCCGCGCGGGTGATCGTCGACACCTACCACAAG
ACCCAGCACAAGCGCGAACTGCCGAAGGCGCCCTGA
Translation:
MQQIQRDIAQALQVQPPFQSEADVQAQIARRIAFIQQCLKDAGLKTLVLGISGGVDSLTAGLLAQRAVEQLR
EQTGDQAYRFIAVRLPYQVQQDEADAQASLATIRADEEQTVNIGPSVKALAEQLEALEGLEPAKSDFVIGNI
KARIRMVAQYAIAGARGGLVIGTDHAAEAVMGFFTKFGDGACDLAPLSGLAKHQVRALARALGAPENLVEKI
PTADLEDLRPGHPDEASHGVTYAEIDAFLHGQPLREEAARVIVDTYHKTQHKRELPKAP*
AnnotationID:2955GeneID:2947
AnnotatorUID: diggins
Modification Date/Time: 2005-04-26 07:07:37
Gene Name:nadE
Confidence Code:2
GeneProduct:NAD synthase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(4) Biosynthesis of cofactors, prosthetic groups and carriers
Alternate Gene Product Name:NH(3)-dependent NAD(+) synthetase
Functional Category Confidence Code:5
COGs:COG0171,pfam02540
Secondary Functional Category(ies):Nucleotide transport and metabolism
EC Number:6.3.5.1
Status:ACTIVE
Pathway:
Homology:
>gb|AAN70438.1|AE016685_3 (AE016792) NH(3)-dependent NAD(+) synthetase [Pseudomonas putida
           KT2440]
          Length = 275

 Score =  400 bits (1027), Expect = e-111
 Identities = 200/275 (72%), Positives = 233/275 (84%)

>gb|AAO58350.1| (AE016873) NH(3)-dependent NAD(+) synthetase [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 275

 Score =  399 bits (1026), Expect = e-111
 Identities = 200/275 (72%), Positives = 232/275 (84%)

>emb|CAB58266.1| (AL939105) NH(3)-dependent NAD(+)synthetase [Streptomyces
           coelicolor A3(2)]
          Length = 276

 Score =  270 bits (691), Expect = 5e-72
 Identities = 151/274 (55%), Positives = 188/274 (68%), Gaps = 8/274 (2%)

Structural Features:
COG0171, NadE, NAD synthase [Coenzyme metabolism]
CD-Length = 268 residues,  94.4% aligned
Score =  263 bits (674), Expect = 1e-71
Identities = 116/260 (44%), Positives = 155/260 (59%), Gaps = 14/260 (5%)

pfam02540, NAD synthase. NAD synthase (EC:6.3.5.1) is involved in the 
de novo synthesis of NAD and is induced by stress factors such as heat shock 
and glucose limitation.
CD-Length = 198 residues,  99.5% aligned
Score =  168 bits (428), Expect = 5e-43
Identities = 77/204 (37%), Positives = 109/204 (53%), Gaps = 22/204 (10%)
Genomic Context:
Comment:
ReferenceID:5897
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:23039
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:35150
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:2947_cdd.html
URL:
ReferenceID:35926
Author/Investigator(s): Hughes KT, Olivera BM, Roth JR.
Title: Structural gene for NAD synthetase in Salmonella typhimurium.
PubMed: 2834324
MedLine:
Source:
J Bacteriol. 1988 May;170(5):2113-20.
Reference Type:Journal
Data:
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=2834324
Homologs By Global Alignment
Gene ID:2947

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
4769 PA4920_tr translation of PA4920 275 99.63 99.99 0 1373.0
136606 gb|AAG08305.1|AE004905_3 (AE004905) NH3-dependent NAD synthetase [Pseudomonas aeruginosa PAO1] 275 99.63 99.99 0 1373.0
136607 dbj|BAC65149.1| (AB091317) ammonia-dependent NAD synthetase [unidentified bacterium] 275 72.72 84.72 0 1037.0
136608 gb|AAN70438.1|AE016685_3 (AE016792) NH(3)-dependent NAD(+) synthetase [Pseudomonas putida KT2440] 275 72.72 84.72 0 1027.0
136609 gb|AAO58350.1| (AE016873) NH(3)-dependent NAD(+) synthetase [Pseudomonas syringae pv. tomato str. DC3000] 275 72.72 84.36 0 1026.0
GC ORFID: 45949How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4920Glimmer Score:
Start: 5054760Stop: 5055587
Length: 828
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA4920 translation of PA4920Homolog Bit Score 533.0
Other Homologs: psyr_15may02_Scaffold8_revised_gene7784 (ORF: BLASTX 401.0), t_PA4920 (ORF: GLIMMER)
GC ORF Sequence
ATGCAACAGATCCAACGCGACATCGCCCAAGCCCTGCAGGTCCAGCCGCCGTTCCAGTCGGAGGCCGACGTG
CAGGCGCAGATCGCCCGGCGCATCGCCTTCATCCAGCAGTGCCTGAAGGATGCCGGGCTGAAGACCCTGGTG
CTGGGGATCAGCGGCGGCGTCGACTCGCTCACCGCCGGCCTGCTGGCCCAGCGCGCCGTCGAGCAACTGCGC
GAGCAGACCGGCGACCAGGCCTACCGCTTCATCGCCGTGCGCCTGCCCTACCAGGTGCAGCAGGACGAGGCC
GATGCCCAGGCCTCGCTGGCGACCATCCGCGCCGACGAAGAGCAGACCGTCAACATCGGTCCGTCGGTGAAA
GCCCTGGCGGAACAGCTGGAAGCCCTGGAAGGACTCGAGCCGGCGAAGAGCGACTTCGTCATCGGCAATATC
AAGGCGCGCATCCGCATGGTCGCCCAGTACGCCATCGCCGGCGCCCGCGGCGGCCTGGTGATCGGCACCGAC
CATGCCGCCGAGGCGGTCATGGGGTTCTTCACCAAGTTCGGCGACGGCGCCTGCGACCTGGCTCCGCTCAGC
GGCCTGGCCAAGCATCAGGTGCGCGCCCTCGCCCGCGCCCTCGGCGCTCCGGAGAACCTGGTGGAGAAGATC
CCCACCGCCGACCTCGAGGACCTGCGCCCCGGCCATCCGGACGAGGCTTCCCACGGCGTCACCTATGCCGAG
ATCGACGCCTTCCTGCACGGCCAGCCGCTGCGCGAGGAAGCCGCGCGGGTGATCGTCGACACCTACCACAAG
ACCCAGCACAAGCGCGAACTGCCGAAGGCGCCCTGA