ViewGene
Locus Name:
GeneID:
Location:

GeneID:2946
TrivialName: PA14_58600
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_58600
PAO1 Ortholog Locus:PA4516
Sequence Length:816
Protein Length:271
Start: 5220484
Stop: 5221299
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07904.1|AE004865_5 (AE004865) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 263/270 (97%), Positives = 265/270 (98%)
Sequence:
ATGCGCCACCTGCTGCTCCGTCACGACGCACTGGACGCCGAAGGTTTCGCCGCACAACTGGCCGGTACCCCG
GGCGAGGTTGCCCAGGCCATCCTCGGCGCTGCGCGCGAGGGCCTGACGGAAGCCCAGGCCCTGCTCGGACAG
ATCCTTCTGGACGGCCAAGGCATCCAGCGCGACCCGCCCCTGGCGCGGACCTGGTTCGCGATCGCCGCCGGG
CACGGCCACGCAATGGCGCGCAATATGCTCGCTCGCTGCCTGGAACATGGCTGGGGCGGCCCGGCGGATCCA
GCCGCGGCAGCGGTCCACTATCGGATCGCCGCCCAGGCCGGCCTCGACTGGGCCCGCTACAACCTGGCCAAT
CTTCACGCTACCGGCCGCGGGGTGCCCCAGGACCAGCCGCGCGCCTATGCGCTGTATCGGCAAGCGGCCGAG
CAGGGCCACGCGAAAGCGATGAACCTGGTGGGGCGCTACCACGAAGAAGGCCTGGTGGTCGCTCGCGACCTG
GCGCAAGCTGCGCACTGGTATCGACGCTCCGCCGAGGGTGGTGATTTTCGCGGCCAGTTCAGCCACGCCGCG
ATGCTCAGCGCCTCGGGCCGCCATGCCGAAGCCGAAACCTGGCTCCGGCGTGCCCTCGAAGGCGGCAACCTG
AACTTCCTGCGCAGCGCCCGCCATGGCCTGGAGCAGTCGGCCCACCCACCGTTCCGCAGCCTGGCGCTGGCC
TACTACCGACGCGCGGCGCAGTTGGGCGACGACACCGATCGAGAGGCCCTGGAACAGGCGCTCGAACGTCAC
GGGCACGCACGACTGCCCGCCTGA
Translation:
MRHLLLRHDALDAEGFAAQLAGTPGEVAQAILGAAREGLTEAQALLGQILLDGQGIQRDPPLARTWFAIAAG
HGHAMARNMLARCLEHGWGGPADPAAAAVHYRIAAQAGLDWARYNLANLHATGRGVPQDQPRAYALYRQAAE
QGHAKAMNLVGRYHEEGLVVARDLAQAAHWYRRSAEGGDFRGQFSHAAMLSASGRHAEAETWLRRALEGGNL
NFLRSARHGLEQSAHPPFRSLALAYYRRAAQLGDDTDREALEQALERHGHARLPA*
AnnotationID:2954GeneID:2946
AnnotatorUID: diggins
Modification Date/Time: 2005-05-04 07:07:28
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA4516
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:5895




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23037




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31563




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2946_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2946
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4768
                           PA4516_tr
                           translation of PA4516
                           271
                           97.04
                           97.78
                           0
                           1373.0
     

     
     
136601
                           gb|AAG07904.1|AE004865_5
                           (AE004865) hypothetical protein PA4516 [Pseudomonas aeruginosa PAO1]
                           271
                           97.04
                           97.78
                           0
                           1373.0
     

     
     
136602
                           gb|AAN66488.1|AE016277_7
                           (AE016777) conserved hypothetical protein [Pseudomonas putida KT2440]
                           276
                           51.08
                           60.50
                           25
                           667.0
     

     
     
136604
                           gb|AAM37788.1|
                           (AE011936) conserved hypothetical protein [Xanthomonas axonopodis pv. citri str. 306]
                           271
                           39.48
                           52.02
                           19
                           486.0
     

     
     
136603
                           gb|AAM42046.1|
                           (AE012390) conserved hypothetical protein [Xanthomonas campestris pv. campestris str. ATCC 33913]
                           288
                           38.19
                           47.22
                           53
                           492.0
     

     






      

          
GC ORFID: 45948How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4516Glimmer Score: 

          
Start: 4484163Stop: 4484978

          
Length: 816


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4516 translation of PA4516Homolog Bit Score 533.0

          
Other Homologs:  t_PA4516 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGCCACCTGCTGCTCCGTCACGACGCACTGGACGCCGAAGGTTTCGCCGCACAACTGGCCGGTACCCCG 
GGCGAGGTTGCCCAGGCCATCCTCGGCGCTGCGCGCGAGGGCCTGACGGAAGCCCAGGCCCTGCTCGGACAG 
ATCCTTCTGGACGGCCAAGGCATCCAGCGCGACCCGCCCCTGGCGCGGACCTGGTTCGCGATCGCCGCCGGG 
CACGGCCACGCAATGGCGCGCAATATGCTCGCTCGCTGCCTGGAACATGGCTGGGGCGGCCCGGCGGATCCA 
GCCGCGGCAGCGGTCCACTATCGGATCGCCGCCCAGGCCGGCCTCGACTGGGCCCGCTACAACCTGGCCAAT 
CTTCACGCTACCGGCCGCGGGGTGCCCCAGGACCAGCCGCGCGCCTATGCGCTGTATCGGCAAGCGGCCGAG 
CAGGGCCACGCGAAAGCGATGAACCTGGTGGGGCGCTACCACGAAGAAGGCCTGGTGGTCGCTCGCGACCTG 
GCGCAAGCTGCGCACTGGTATCGACGCTCCGCCGAGGGTGGTGATTTTCGCGGCCAGTTCAGCCACGCCGCG 
ATGCTCAGCGCCTCGGGCCGCCATGCCGAAGCCGAAACCTGGCTCCGGCGTGCCCTCGAAGGCGGCAACCTG 
AACTTCCTGCGCAGCGCCCGCCATGGCCTGGAGCAGTCGGCCCACCCACCGTTCCGCAGCCTGGCGCTGGCC 
TACTACCGACGCGCGGCGCAGTTGGGCGACGACACCGATCGAGAGGCCCTGGAACAGGCGCTCGAACGTCAC 
GGGCACGCACGACTGCCCGCCTGA