ViewGene
Locus Name:
GeneID:
Location:

GeneID:2944
TrivialName: PA14_02030
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_02030
PAO1 Ortholog Locus:PA0163
Sequence Length:798
Protein Length:265
Start: 185614
Stop: 184817
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03553.1|AE004454_5 (AE004454) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 265/265 (100%), Positives = 265/265 (100%)
Sequence:
ATGACGATGAACGGACAGCCTGCGGAACTGCACCGCCCGATTCCCACCCTCGCCCGCCTGCCACGGCCGGTC
TACGCGCGCGCCGAAAGCCTGCGCGCCGGCTCCTGGACCTCGCGCCACCGGCACGCCTGGGTGCAGCTTTCC
TACGCCATCAGCGGCGTGCTCGGCGTGCATACCGCCGAGGGCAGCTTCTTCGCCCCGCCGCAGCGGGCGATC
TGGATTCCGGCGCAACTGGAACACGAGGTGGTCACCTCCACCCGCGCCGAGATGCGCAGCCTGTACATCCGT
GGCGACGCCTGCGCCTGGGCGCCGACGCGTTGCCGGGTGCTGGAGGTGACGCCGCTGGCGCGCGAGCTGATC
AAGAGTTTCTGCGAGTTGCCGGTGGACTACCCGGAGGGCGACAGCGCCGAATCGCGGCTGGTGCAGGTGCTG
CTGGACCAGCTACGCCTGCTGCCGGAGGTCGCCTTCTCCCTGCCGATGCCGCGCGAGCCGCGCCTGCTGCGG
CTGTGCCAGGCACTGATCGACGAACCGACCCAGAGCCTGACCATGGGCGACTGGGCGCAGCGCCTGGGCACC
TCGGAAAAGACCCTGTCGCGCCTGTTCCAGCGCGAGACCGGGATGAACTACCGGCTCTGGCGCCAACGCCAG
CGCCTGCTCGCCTCGCTCAACGCGCTGGAGGCCGGCGACAGCGTCACCGGCGCCGCCCTGGACAGCGGCTAC
GACTCGACCTCGGCCTACATCGCCGCCTTCAAGGGACTCTTCGGCTTCACTCCCGGCGAACTGTTCCGCCAG
CGCTGA
Translation:
MTMNGQPAELHRPIPTLARLPRPVYARAESLRAGSWTSRHRHAWVQLSYAISGVLGVHTAEGSFFAPPQRAI
WIPAQLEHEVVTSTRAEMRSLYIRGDACAWAPTRCRVLEVTPLARELIKSFCELPVDYPEGDSAESRLVQVL
LDQLRLLPEVAFSLPMPREPRLLRLCQALIDEPTQSLTMGDWAQRLGTSEKTLSRLFQRETGMNYRLWRQRQ
RLLASLNALEAGDSVTGAALDSGYDSTSAYIAAFKGLFGFTPGELFRQR*
AnnotationID:2952GeneID:2944
AnnotatorUID: diggins
Modification Date/Time: 2005-03-23 07:07:29
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator, AraC family
Cell Localization:()
Synonyms:PA0163
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2207,smart00342
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN66210.1|AE016249_2 (AE016776) transcriptional regulator, AraC family [Pseudomonas
           putida KT2440]
          Length = 259

 Score =  367 bits (943), Expect = e-101
 Identities = 182/250 (72%), Positives = 202/250 (80%)








 
Structural Features:
COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]
CD-Length = 127 residues,  95.3% aligned
Score = 79.9 bits (196), Expect = 3e-16
Identities = 44/121 (36%), Positives = 65/121 (53%), Gaps = 1/121 (0%)

smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein
CD-Length = 84 residues,  97.6% aligned
Score = 70.6 bits (173), Expect = 2e-13
Identities = 35/82 (42%), Positives = 46/82 (56%), Gaps = 1/82 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:5891




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23033




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33533




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2944_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2944
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4763
                           PA0163_tr
                           translation of PA0163
                           265
                           99.99
                           99.99
                           0
                           1375.0
     

     
     
136536
                           gb|AAG03553.1|AE004454_5
                           (AE004454) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           265
                           99.99
                           99.99
                           0
                           1375.0
     

     
     
136537
                           gb|AAN66210.1|AE016249_2
                           (AE016776) transcriptional regulator, AraC family [Pseudomonas putida KT2440]
                           265
                           69.81
                           77.73
                           6
                           941.0
     

     
     
136539
                           gb|AAG04988.1|AE004588_1
                           (AE004588) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           269
                           42.75
                           54.64
                           13
                           507.0
     

     
     
4765
                           PA1599_tr
                           translation of PA1599
                           269
                           42.75
                           54.64
                           13
                           507.0
     

     






      

          
GC ORFID: 45946How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0163Glimmer Score: 

          
Start: 5986953Stop: 5986156

          
Length: 798


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0163 translation of PA0163Homolog Bit Score 534.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3483 (ORF: BLASTX 382.0), t_PA1235 (ORF: BLASTX 207.0), t_PA1599 (ORF: BLASTX 197.0), t_PA3927 (ORF: BLASTX 165.0), t_PA0163 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACGATGAACGGACAGCCTGCGGAACTGCACCGCCCGATTCCCACCCTCGCCCGCCTGCCACGGCCGGTC 
TACGCGCGCGCCGAAAGCCTGCGCGCCGGCTCCTGGACCTCGCGCCACCGGCACGCCTGGGTGCAGCTTTCC 
TACGCCATCAGCGGCGTGCTCGGCGTGCATACCGCCGAGGGCAGCTTCTTCGCCCCGCCGCAGCGGGCGATC 
TGGATTCCGGCGCAACTGGAACACGAGGTGGTCACCTCCACCCGCGCCGAGATGCGCAGCCTGTACATCCGT 
GGCGACGCCTGCGCCTGGGCGCCGACGCGTTGCCGGGTGCTGGAGGTGACGCCGCTGGCGCGCGAGCTGATC 
AAGAGTTTCTGCGAGTTGCCGGTGGACTACCCGGAGGGCGACAGCGCCGAATCGCGGCTGGTGCAGGTGCTG 
CTGGACCAGCTACGCCTGCTGCCGGAGGTCGCCTTCTCCCTGCCGATGCCGCGCGAGCCGCGCCTGCTGCGG 
CTGTGCCAGGCACTGATCGACGAACCGACCCAGAGCCTGACCATGGGCGACTGGGCGCAGCGCCTGGGCACC 
TCGGAAAAGACCCTGTCGCGCCTGTTCCAGCGCGAGACCGGGATGAACTACCGGCTCTGGCGCCAACGCCAG 
CGCCTGCTCGCCTCGCTCAACGCGCTGGAGGCCGGCGACAGCGTCACCGGCGCCGCCCTGGACAGCGGCTAC 
GACTCGACCTCGGCCTACATCGCCGCCTTCAAGGGACTCTTCGGCTTCACTCCCGGCGAACTGTTCCGCCAG 
CGCTGA