ViewGene
Locus Name:
GeneID:
Location:

GeneID:2943
TrivialName: PA14_55810
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_55810
PAO1 Ortholog Locus:PA4296
Sequence Length:828
Protein Length:275
Start: 4983977
Stop: 4984804
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07684.1|AE004846_1 (AE004846) probable two-component response regulator [Pseudomonas aeruginosa PAO1]
Identities = 272/275 (98%), Positives = 274/275 (99%)
Sequence:
ATGGACAAACCGGCCTCGCGGCATTTCAGCGTCTTGATCATCGATGATGAACCCCAGGTGACCTCGGAACTC
CGCGAACTGCTGGAAAACAGTGGCTACCGTTGCGTAACCAGCACCCACCGGGAGTCGGCGATCGCCAGCTTC
CAGGCCGACCCGAACATCGGCCTGGTCATCTGCGACCTCTACCTGGGGCAGGACAACGGTATCCGCCTGATC
GAGAGCCTCAAGGAAGTCGCCGGCAACGGCAGGTTCTTCGAATCGATCATCCTCACCGGTCACGATGGCCGC
CAGGAAGTGATCGAGGCCATGCGGGTCGGCGCCGCCGACTACTACCAGAAACCGGTGGCGCCGCAGGAACTG
CTGCATGGCCTCGAACGCCTGGAGAACCGCCTGCACGAGCGCGTCCGCAGCCAGTTGAGCCTGAGCCACGTC
AACCAGCGCCTGGAATACCTCGCCGAATCGCTGAACTCGATCTACCGCGACATCCACAAGATCAAGTACGAG
GTACACGGCAACAGCCAGCCGAGTGCCCTCAAGAGCGAAGACAGCCAGCCGTCCGCGCCGCCGGCGTCGGTC
GCGGAAAGCCAGGTGTCCCCGAGCAATCCGCTGTTCGGCAAGCTGTCGCCCCGCCAGCAGGCGGTGGCGCGG
CTGGTGAGCAAGGGCCTGACCAACTACCAGATCGCCTACGAACTGGGCATCACCGAGAACACGGTGAAGCTG
TACGTCTCCCAGGTGCTGCGCCTGATGCATATGCACAACCGCACACAGCTGGCGCTGGCCCTGTCGCCTGCG
GCGATGCAGCAGGGCAGCGGAGCGGTGGTGCACTGA
Translation:
MDKPASRHFSVLIIDDEPQVTSELRELLENSGYRCVTSTHRESAIASFQADPNIGLVICDLYLGQDNGIRLI
ESLKEVAGNGRFFESIILTGHDGRQEVIEAMRVGAADYYQKPVAPQELLHGLERLENRLHERVRSQLSLSHV
NQRLEYLAESLNSIYRDIHKIKYEVHGNSQPSALKSEDSQPSAPPASVAESQVSPSNPLFGKLSPRQQAVAR
LVSKGLTNYQIAYELGITENTVKLYVSQVLRLMHMHNRTQLALALSPAAMQQGSGAVVH*
AnnotationID:2951GeneID:2943
AnnotatorUID: diggins
Modification Date/Time: 2005-04-04 07:07:10
Gene Name:
Confidence Code:3
GeneProduct:putative two-component response regulator
Cell Localization:()
Synonyms:PA4296
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(28) Two-component regulatory systems
Alternate Gene Product Name:putative DNA binding response regulator, LuxR family
Functional Category Confidence Code:5
COGs:COG2197
Secondary Functional Category(ies):signal transduction mechanisms
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN66201.1|AE016248_4 (AE016776) DNA-binding response regulator, LuxR family [Pseudomonas
           putida KT2440]
          Length = 258

 Score =  241 bits (614), Expect = 4e-63
 Identities = 131/255 (51%), Positives = 170/255 (66%), Gaps = 16/255 (6%)

>gb|AAO58265.1| (AE016873) DNA binding response regulator, LuxR family [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 260

 Score =  214 bits (545), Expect = 4e-55
 Identities = 119/253 (47%), Positives = 158/253 (62%), Gaps = 15/253 (5%)








 
Structural Features:
COG2197, CitB, Response regulator containing a CheY-like 
receiver domain and an HTH DNA-binding domain 
Signal transduction mechanisms / Transcription]
CD-Length = 211 residues,  94.8% aligned
Score =  104 bits (260), Expect = 2e-23
Identities = 62/251 (24%), Positives = 102/251 (40%), Gaps = 52/251 (20%)







   
Genomic Context:






   
Comment:


















    ReferenceID:5889




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23031




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36659




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2943_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2943
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4762
                           PA4296_tr
                           translation of PA4296
                           275
                           98.90
                           99.63
                           0
                           1375.0
     

     
     
136533
                           gb|AAG07684.1|AE004846_1
                           (AE004846) probable two-component response regulator [Pseudomonas aeruginosa PAO1]
                           275
                           98.90
                           99.63
                           0
                           1375.0
     

     
     
136534
                           gb|AAN66201.1|AE016248_4
                           (AE016776) DNA-binding response regulator, LuxR family [Pseudomonas putida KT2440]
                           281
                           48.39
                           62.98
                           29
                           623.0
     

     
     
136535
                           gb|AAO58265.1|
                           (AE016873) DNA binding response regulator, LuxR family [Pseudomonas syringae pv. tomato str. DC3000]
                           284
                           42.95
                           57.39
                           33
                           545.0
     

     






      

          
GC ORFID: 45945How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4296Glimmer Score: 

          
Start: 4247653Stop: 4248480

          
Length: 828


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4296 translation of PA4296Homolog Bit Score 534.0

          
Other Homologs:  psyr_15may02_Scaffold4_revised_gene5747 (ORF: BLASTX 224.0), t_PA4296 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGACAAACCGGCCTCGCGGCATTTCAGCGTCTTGATCATCGATGATGAACCCCAGGTGACCTCGGAACTC 
CGCGAACTGCTGGAAAACAGTGGCTACCGTTGCGTAACCAGCACCCACCGGGAGTCGGCGATCGCCAGCTTC 
CAGGCCGACCCGAACATCGGCCTGGTCATCTGCGACCTCTACCTGGGGCAGGACAACGGTATCCGCCTGATC 
GAGAGCCTCAAGGAAGTCGCCGGCAACGGCAGGTTCTTCGAATCGATCATCCTCACCGGTCACGATGGCCGC 
CAGGAAGTGATCGAGGCCATGCGGGTCGGCGCCGCCGACTACTACCAGAAACCGGTGGCGCCGCAGGAACTG 
CTGCATGGCCTCGAACGCCTGGAGAACCGCCTGCACGAGCGCGTCCGCAGCCAGTTGAGCCTGAGCCACGTC 
AACCAGCGCCTGGAATACCTCGCCGAATCGCTGAACTCGATCTACCGCGACATCCACAAGATCAAGTACGAG 
GTACACGGCAACAGCCAGCCGAGTGCCCTCAAGAGCGAAGACAGCCAGCCGTCCGCGCCGCCGGCGTCGGTC 
GCGGAAAGCCAGGTGTCCCCGAGCAATCCGCTGTTCGGCAAGCTGTCGCCCCGCCAGCAGGCGGTGGCGCGG 
CTGGTGAGCAAGGGCCTGACCAACTACCAGATCGCCTACGAACTGGGCATCACCGAGAACACGGTGAAGCTG 
TACGTCTCCCAGGTGCTGCGCCTGATGCATATGCACAACCGCACACAGCTGGCGCTGGCCCTGTCGCCTGCG 
GCGATGCAGCAGGGCAGCGGAGCGGTGGTGCACTGA