ViewGene
Locus Name:
GeneID:
Location:

GeneID:2942
TrivialName: PA14_19510
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_19510
PAO1 Ortholog Locus:PA3448
Sequence Length:825
Protein Length:274
Start: 1686813
Stop: 1687637
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06836.1|AE004765_9 (AE004765) probable permease of ABC transporter [Pseudomonas aeruginosa PAO1]
Identities = 273/274 (99%), Positives = 273/274 (99%)
Sequence:
ATGGTCAGCCAGAGCCTGCGACTGGCCCGGCGAGTCTCGCGCCGGGCGTGGCGACTGCGCGTGCCGGGCGCC
TGGCGGGCCTGGGCCTTGCCGCTGCTGGCACTATCGTCGTGGGAGGCGCTGGTGCGCCTGGGCTGGCTGCCG
GCCTACCAGATGCCAGCGCCGAGCGGCATCCTGCTGACCCTGGTGGAACTGGCTCGCGGCGAGCTGTGGGGG
CATGTCGGCGCGAGCCTGGCGCGGGTCGCCGCCGGTTTCGCGATCGGCAGCGGCCTGGCTCTGGCGGTCGGA
ACCTGGGTCGGCCTCAGTCGTCGCGCCGAAGCCTACCTCGAGCCGAGCTTCCAGGCCCTGCGGGCGATCCCC
AGCCTGGCCTGGGTGCCCTTGCTGCTGCTCTGGTTCGGCATCGACGAGACGCCGAAGATCGTCCTCATCGCC
CTCGGCGCCTTCTTCCCGGTCTACCTCGCGCTGGTCGCCGGGGTACGCGGGGTCGACCGCAAGTGGGTGGAA
TTGGGGCGGCTCTACCGTTTGTCGCGCTTCGCCCTGGTCCGCCGCATCCTCCTTCCGGCGGCGCTGCCGAAC
CTGTTCACCGGCCTGCGCGGAGCGCTCAGCCTGAGCTGGATGTTCCTCGTCGCGGCGGAGCTGATCGCCGCC
ACCCAGGGCCTCGGCTACCTGCTCAGCGACGGTCGGGAAACCTCGCGTCCGGACCTGGTGATCGCCGCGATC
CTGGTCCTGGCGGCGCTCGGCAAGCTCAGCGACGGCCTGCTCCGCTCGCTGGAGCGCCGGGCCCTGCGCTGG
CGCGACAGTTTCGACGGGGAGGGCGGCGCATGA
Translation:
MVSQSLRLARRVSRRAWRLRVPGAWRAWALPLLALSSWEALVRLGWLPAYQMPAPSGILLTLVELARGELWG
HVGASLARVAAGFAIGSGLALAVGTWVGLSRRAEAYLEPSFQALRAIPSLAWVPLLLLWFGIDETPKIVLIA
LGAFFPVYLALVAGVRGVDRKWVELGRLYRLSRFALVRRILLPAALPNLFTGLRGALSLSWMFLVAAELIAA
TQGLGYLLSDGRETSRPDLVIAAILVLAALGKLSDGLLRSLERRALRWRDSFDGEGGA*
AnnotationID:2950GeneID:2942
AnnotatorUID: diggins
Modification Date/Time: 2005-08-21 09:09:47
Gene Name:
Confidence Code:3
GeneProduct:putative aliphatic sulfonates ABC transporter
Cell Localization:(4) Inner membrane protein
Synonyms:ssuC
Cell Localization Confidence Code:3
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:putative permease of ABC transporter
Functional Category Confidence Code:5
COGs:COG0600
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO56287.1| (AE016865) ABC transporter, permease protein [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 282

 Score =  343 bits (879), Expect = 8e-94
 Identities = 174/259 (67%), Positives = 206/259 (79%), Gaps = 3/259 (1%)

>gb|AAP09859.1| (AE017007) Alkanesulfonates transport system permease protein
           [Bacillus cereus ATCC 14579]
          Length = 282

 Score =  232 bits (592), Expect = 2e-60
 Identities = 119/274 (43%), Positives = 172/274 (62%), Gaps = 1/274 (0%)

>gb|AAP26742.1| (AE017033) sulfonate ABC transporter, permease protein, putative
           [Bacillus anthracis str. Ames]
          Length = 282

 Score =  226 bits (576), Expect = 1e-58
 Identities = 114/270 (42%), Positives = 168/270 (62%), Gaps = 1/270 (0%)








 
Structural Features:
COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, 
permease component 
[Inorganic ion transport and metabolism]
CD-Length = 258 residues,  99.2% aligned
Score =  214 bits (547), Expect = 9e-57
Identities = 126/256 (49%), Positives = 164/256 (64%), Gaps = 1/256 (0%)







   
Genomic Context:






   
Comment:


















    ReferenceID:5887




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23029




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32121




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2942_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2942
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4759
                           PA3448_tr
                           translation of PA3448
                           274
                           99.63
                           99.63
                           0
                           1376.0
     

     
     
136490
                           gb|AAG06836.1|AE004765_9
                           (AE004765) probable permease of ABC transporter [Pseudomonas aeruginosa PAO1]
                           274
                           99.63
                           99.63
                           0
                           1376.0
     

     
     
136492
                           gb|AAM35736.1|
                           (AE011716) ABC transporter permease [Xanthomonas axonopodis pv. citri str. 306]
                           283
                           62.89
                           73.85
                           9
                           839.0
     

     
     
136491
                           gb|AAO56287.1|
                           (AE016865) ABC transporter, permease protein [Pseudomonas syringae pv. tomato str. DC3000]
                           286
                           61.88
                           73.42
                           16
                           879.0
     

     
     
136493
                           emb|CAE28064.1|
                           (BX572601) possible sulfonate transport system permease protein. Subunit of an ABC transporter [Rhodopseudomonas palustris CGA009]
                           291
                           47.76
                           60.13
                           28
                           607.0
     

     






      

          
GC ORFID: 45944How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3448Glimmer Score: 

          
Start: 3267119Stop: 3266295

          
Length: 825


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3448 translation of PA3448Homolog Bit Score 534.0

          
Other Homologs:  t_PA3443 (ORF: BLASTX 229.0), psyr_15may02_Scaffold6_revised_gene6501 (ORF: BLASTX 227.0), t_PA3448 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGTCAGCCAGAGCCTGCGACTGGCCCGGCGAGTCTCGCGCCGGGCGTGGCGACTGCGCGTGCCGGGCGCC 
TGGCGGGCCTGGGCCTTGCCGCTGCTGGCACTATCGTCGTGGGAGGCGCTGGTGCGCCTGGGCTGGCTGCCG 
GCCTACCAGATGCCAGCGCCGAGCGGCATCCTGCTGACCCTGGTGGAACTGGCTCGCGGCGAGCTGTGGGGG 
CATGTCGGCGCGAGCCTGGCGCGGGTCGCCGCCGGTTTCGCGATCGGCAGCGGCCTGGCTCTGGCGGTCGGA 
ACCTGGGTCGGCCTCAGTCGTCGCGCCGAAGCCTACCTCGAGCCGAGCTTCCAGGCCCTGCGGGCGATCCCC 
AGCCTGGCCTGGGTGCCCTTGCTGCTGCTCTGGTTCGGCATCGACGAGACGCCGAAGATCGTCCTCATCGCC 
CTCGGCGCCTTCTTCCCGGTCTACCTCGCGCTGGTCGCCGGGGTACGCGGGGTCGACCGCAAGTGGGTGGAA 
TTGGGGCGGCTCTACCGTTTGTCGCGCTTCGCCCTGGTCCGCCGCATCCTCCTTCCGGCGGCGCTGCCGAAC 
CTGTTCACCGGCCTGCGCGGAGCGCTCAGCCTGAGCTGGATGTTCCTCGTCGCGGCGGAGCTGATCGCCGCC 
ACCCAGGGCCTCGGCTACCTGCTCAGCGACGGTCGGGAAACCTCGCGTCCGGACCTGGTGATCGCCGCGATC 
CTGGTCCTGGCGGCGCTCGGCAAGCTCAGCGACGGCCTGCTCCGCTCGCTGGAGCGCCGGGCCCTGCGCTGG 
CGCGACAGTTTCGACGGGGAGGGCGGCGCATGA