ViewGene
Locus Name:
GeneID:
Location:

GeneID:2941
TrivialName: PA14_44540
AnnotatorUID: danlee
Modification Date/Time:2006-06-03 00:12:17
LocusName:PA14_44540
PAO1 Ortholog Locus:PA1539
Sequence Length:855
Protein Length:284
Start: 3965971
Stop: 3965117
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04928.1|AE004582_6 (AE004582) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 277/281 (98%), Positives = 277/281 (98%)
Sequence:
GTGGAACAGAGCGATATGAACGAAACGAAGGACAGGGTTGCCGACGCTCCCGGCAAACGCGCCTTGCTGGAG
GCGGCCTTGCGCCTGGGCAGCAGCAGCCGCAGCCTGGGGGCCATCGGCTTGCGCGAGCTGGCGCGCGAGGCG
GGCCTGAATCCGAACACCTTCTATCGGCATTTCCGCGATATCGACGATCTTGGCCTGACCATGATCCGCGAC
ATCTCTACCCAGCTGCGCCAGCCGCTGCGCCAGCTTCGCCGCGAGGCCGCGACCCGTGCGGCGCCTTGTGCC
AGGCCGCAGACGACACCGTTCGGCCTGGACCTGGAAAGGGGGCGGCGGGTCTGCCGGGAGACGGTGCGGCTG
TTCTTCGACTTCGTGGAGAGCAATCCCGCCGCGTTCATCGTCGGCGTGCGCGAACTGCATGGGGCTTCGCCG
GTGCTGCGTGGTGCCCTGCGTCAGATCATGGATGAGTTCGCCGAGGACATGTCGGAGGACATCATCGAATTC
AGGTTGTTGCCGGCGGTGAGCGAGGCGACCATCCGCCGCCTCTCCAGCCTGATCGGCCGCCAGCTGTTTCAG
TTGTCGCTGGACTATATCGGCCAGCCGGAGCGGCGTCGGGAAATCTGCGCCCTGGGCGAGGAACAGATACTG
CTGTTGTTCACCGGCGCCGCGGTCCTGCAGATGATGGGCGTTTCGTTGGACGCCGAGGCGTCAGGCCAGCTT
GAGCAGGCTCATGCCGACCAGCAGCAGCAACAGGCCGAGCCAGCCGCGCCAGGCCAGGCGCTGGCCGAACAG
CGCCCAGCCCATGGCGACGGTGGCGAGGATACCGAAGCCGCCCCAGATCGCATAGGCGAGTGA
Translation:
MEQSDMNETKDRVADAPGKRALLEAALRLGSSSRSLGAIGLRELAREAGLNPNTFYRHFRDIDDLGLTMIRD
ISTQLRQPLRQLRREAATRAAPCARPQTTPFGLDLERGRRVCRETVRLFFDFVESNPAAFIVGVRELHGASP
VLRGALRQIMDEFAEDMSEDIIEFRLLPAVSEATIRRLSSLIGRQLFQLSLDYIGQPERRREICALGEEQIL
LLFTGAAVLQMMGVSLDAEASGQLEQAHADQQQQQAEPAAPGQALAEQRPAHGDGGEDTEAAPDRIGE*
AnnotationID:2949GeneID:2941
AnnotatorUID: diggins
Modification Date/Time: 2005-02-25 08:08:24
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA1539
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:14701




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23027




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37315




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2941_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2941
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4758
                           PA1539_tr
                           translation of PA1539
                           284
                           97.53
                           97.53
                           2
                           1376.0
     

     
     
136489
                           gb|AAG04928.1|AE004582_6
                           (AE004582) hypothetical protein PA1539 [Pseudomonas aeruginosa PAO1]
                           284
                           97.53
                           97.53
                           2
                           1376.0
     

     






      

          
GC ORFID: 45943How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1539Glimmer Score: 

          
Start: 987938Stop: 988792

          
Length: 855


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1539 translation of PA1539Homolog Bit Score 534.0

          
Other Homologs:  t_PA1539 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGGAACAGAGCGATATGAACGAAACGAAGGACAGGGTTGCCGACGCTCCCGGCAAACGCGCCTTGCTGGAG 
GCGGCCTTGCGCCTGGGCAGCAGCAGCCGCAGCCTGGGGGCCATCGGCTTGCGCGAGCTGGCGCGCGAGGCG 
GGCCTGAATCCGAACACCTTCTATCGGCATTTCCGCGATATCGACGATCTTGGCCTGACCATGATCCGCGAC 
ATCTCTACCCAGCTGCGCCAGCCGCTGCGCCAGCTTCGCCGCGAGGCCGCGACCCGTGCGGCGCCTTGTGCC 
AGGCCGCAGACGACACCGTTCGGCCTGGACCTGGAAAGGGGGCGGCGGGTCTGCCGGGAGACGGTGCGGCTG 
TTCTTCGACTTCGTGGAGAGCAATCCCGCCGCGTTCATCGTCGGCGTGCGCGAACTGCATGGGGCTTCGCCG 
GTGCTGCGTGGTGCCCTGCGTCAGATCATGGATGAGTTCGCCGAGGACATGTCGGAGGACATCATCGAATTC 
AGGTTGTTGCCGGCGGTGAGCGAGGCGACCATCCGCCGCCTCTCCAGCCTGATCGGCCGCCAGCTGTTTCAG 
TTGTCGCTGGACTATATCGGCCAGCCGGAGCGGCGTCGGGAAATCTGCGCCCTGGGCGAGGAACAGATACTG 
CTGTTGTTCACCGGCGCCGCGGTCCTGCAGATGATGGGCGTTTCGTTGGACGCCGAGGCGTCAGGCCAGCTT 
GAGCAGGCTCATGCCGACCAGCAGCAGCAACAGGCCGAGCCAGCCGCGCCAGGCCAGGCGCTGGCCGAACAG 
CGCCCAGCCCATGGCGACGGTGGCGAGGATACCGAAGCCGCCCCAGATCGCATAGGCGAGTGA