ViewGene
Locus Name:
GeneID:
Location:

GeneID:2940
TrivialName: PA14_46650
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_46650
PAO1 Ortholog Locus:PA1364
Sequence Length:843
Protein Length:280
Start: 4159150
Stop: 4158308
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04753.1|AE004565_12 (AE004565) probable transmembrane sensor [Pseudomonas aeruginosa PAO1]
Identities = 276/280 (98%), Positives = 277/280 (98%)
Sequence:
ATGACCCAGCCCTCGAAACGGAATGGGCAGGTTCCGCTGGACGACGCCCTGGAGCGCCATCGCGACGCGCTG
AAGGACCTGTTCCCGCTGCCGCCCTCCCGGCCGAAATCGCGCAAGGCAAGCAAGGCGGCCGGCGTCGCGCTA
TTGCTGGCGCTGGCCATCGGCGCCCTGACCTGGCTGGACCCGGCCTACAAGCGCGAGCGCTTCGCCACCGCC
ATCGGTGAGCGGCGCGACGTGACCCTGGCCGACGGCAGCCAGCTCCTGCTCGACAGCGGCAGCCAGATCGAG
GTCAGTTGGCACCCGCTCAGCCGCCGGGTCGCGTTGCGCGCGGGGCAGGTGCTTTTCGAGGTATCCCCGGCG
CGCTATCGGCCCTTCGTGGTGTCCGCGGGGTCGACCGACGTCCGCGTGCTCGGCACCCGGTTCAACGTGCGC
CGCCTGGACGACGACGTCCGCGTGACCCTGGAGCGTGGCCGGGTGGAGGTCGGCACCTCGGCTACGGCGCAA
GCGCCAGTCGTGCTCCTGCCGGGCCAGCAGGTCGATGCCATTGGCGGGCAACTGATGCCGCTGGCCAAGGTC
GATGCCGCCACGGCGATGGCCTGGAAAGACGACCGCCTGGTCTTCGAGCGCACGCCCCTGGGCGAAGCCGTC
GCGCTGCTACGCCATTACCGCAAGGCGCCCATTCTCCTGGACGACCCCAGCCTGGCCTCCCTCCGGCTGACC
GGCGTCTTCGCCGCGCACAACGTCGACCGGCTGCTCGACCTGCTGCCGAGCATCCTTCCCGTGGCCGTGTCG
CGGCAGGAGGACGGCAGTGTCGAGATCCAACGCAAATCGACTCGAAAATAA
Translation:
MTQPSKRNGQVPLDDALERHRDALKDLFPLPPSRPKSRKASKAAGVALLLALAIGALTWLDPAYKRERFATA
IGERRDVTLADGSQLLLDSGSQIEVSWHPLSRRVALRAGQVLFEVSPARYRPFVVSAGSTDVRVLGTRFNVR
RLDDDVRVTLERGRVEVGTSATAQAPVVLLPGQQVDAIGGQLMPLAKVDAATAMAWKDDRLVFERTPLGEAV
ALLRHYRKAPILLDDPSLASLRLTGVFAAHNVDRLLDLLPSILPVAVSRQEDGSVEIQRKSTRK*
AnnotationID:2948GeneID:2940
AnnotatorUID: diggins
Modification Date/Time: 2005-02-23 20:08:24
Gene Name:
Confidence Code:3
GeneProduct:putative transmembrane sensor
Cell Localization:()
Synonyms:PA1364
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):transport of small molecules
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAD16626.1| (AL646072) PUTATIVE IRON TRANSPORT-SENSORY TRANSDUCTION
           TRANSMEMBRANE PROTEIN [Ralstonia solanacearum]
          Length = 274

 Score =  213 bits (541), Expect = 1e-54
 Identities = 119/261 (45%), Positives = 166/261 (63%), Gaps = 10/261 (3%)

>gb|AAN66491.1|AE016278_2 (AE016777) transmembrane sensor, putative [Pseudomonas putida
           KT2440]
          Length = 328

 Score =  144 bits (363), Expect = 6e-34
 Identities = 94/244 (38%), Positives = 128/244 (52%), Gaps = 3/244 (1%)






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:5883




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23025




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37410




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2940_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2940
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4757
                           PA1364_tr
                           translation of PA1364
                           280
                           98.57
                           98.92
                           0
                           1376.0
     

     
     
136487
                           gb|AAG04753.1|AE004565_12
                           (AE004565) probable transmembrane sensor [Pseudomonas aeruginosa PAO1]
                           280
                           98.57
                           98.92
                           0
                           1376.0
     

     
     
136488
                           emb|CAD16626.1|
                           (AL646072) PUTATIVE IRON TRANSPORT-SENSORY TRANSDUCTION TRANSMEMBRANE PROTEIN [Ralstonia solanacearum]
                           288
                           42.01
                           59.02
                           22
                           545.0
     

     






      

          
GC ORFID: 45942How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1364Glimmer Score: 

          
Start: 794759Stop: 795601

          
Length: 843


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA1364 translation of PA1364Homolog Bit Score 534.0

          
Other Homologs:  t_PA1364 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCCAGCCCTCGAAACGGAATGGGCAGGTTCCGCTGGACGACGCCCTGGAGCGCCATCGCGACGCGCTG 
AAGGACCTGTTCCCGCTGCCGCCCTCCCGGCCGAAATCGCGCAAGGCAAGCAAGGCGGCCGGCGTCGCGCTA 
TTGCTGGCGCTGGCCATCGGCGCCCTGACCTGGCTGGACCCGGCCTACAAGCGCGAGCGCTTCGCCACCGCC 
ATCGGTGAGCGGCGCGACGTGACCCTGGCCGACGGCAGCCAGCTCCTGCTCGACAGCGGCAGCCAGATCGAG 
GTCAGTTGGCACCCGCTCAGCCGCCGGGTCGCGTTGCGCGCGGGGCAGGTGCTTTTCGAGGTATCCCCGGCG 
CGCTATCGGCCCTTCGTGGTGTCCGCGGGGTCGACCGACGTCCGCGTGCTCGGCACCCGGTTCAACGTGCGC 
CGCCTGGACGACGACGTCCGCGTGACCCTGGAGCGTGGCCGGGTGGAGGTCGGCACCTCGGCTACGGCGCAA 
GCGCCAGTCGTGCTCCTGCCGGGCCAGCAGGTCGATGCCATTGGCGGGCAACTGATGCCGCTGGCCAAGGTC 
GATGCCGCCACGGCGATGGCCTGGAAAGACGACCGCCTGGTCTTCGAGCGCACGCCCCTGGGCGAAGCCGTC 
GCGCTGCTACGCCATTACCGCAAGGCGCCCATTCTCCTGGACGACCCCAGCCTGGCCTCCCTCCGGCTGACC 
GGCGTCTTCGCCGCGCACAACGTCGACCGGCTGCTCGACCTGCTGCCGAGCATCCTTCCCGTGGCCGTGTCG 
CGGCAGGAGGACGGCAGTGTCGAGATCCAACGCAAATCGACTCGAAAATAA