ViewGene
Locus Name:
GeneID:
Location:

GeneID:294
TrivialName: PA14_60490
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_60490
PAO1 Ortholog Locus:PA4571
Sequence Length:2028
Protein Length:675
Start: 5391003
Stop: 5393030
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07959.1|AE004870_10 (AE004870) probable cytochrome c [Pseudomonas aeruginosa PAO1]
Identities = 673/675 (99%), Positives = 674/675 (99%)
Sequence:
ATGCCTGCTTCTTTCCCGCGCCTCGGCTTGCTCGGCGCGCTGTGCTCCATCGTTCCCCTGCTCCATGCCAGC
GAACCGACCACGGACGCTGCGCTCATCGAAAAAGGCCGCTACGTGGCCCAGCTCGGCGACTGCATCGCCTGC
CATACCGGCCCGCAGGGCGCGCCGATGGCCGGCGGCCTGGAGCTGAAGACGCCAATGGGTACCATCTACTCG
ACCAACATCACTCCCGACCGGGAGACCGGCATCGGCCGCTACAGCTTCGAAGAGTTCGACCGCGCCATGCGC
AAGGGGGTGACCGCCGAGGGAGTGAATCTCTATCCGGCGATGCCCTACCCGTCCTACGCCAAGATCAGCGAA
GAAGACATGCGTGCGCTGTACGCCTACCTGATGCACGGCGTGCAACCCGTCACCCAGGCGAATACGCCGAGC
GCGATGAGCTGGCCGTTCAACCAGCGCTGGGGCCTGTCGCTGTGGAACTGGGCGTTCCTCGACGACGCGCCG
TTCACCCCCTCCAGCGACGCGGACCCGGTGATCAACCGCGGCGCCTACCTGGTACAGGGGCTCGGCCACTGC
GGCGCCTGCCATACTCCGCGCGGCATCGCCTTCCAGGAAAAAGCCATGAGCGAAGCCGGTCGTTCCGGGCAG
TTCTACCTCGCCGGAGAAACCGTCGAACAATGGCAAGCCCTGAGCCTGCGCAACCTGTGGACGGTGGAGGAC
ACCGTGCAGTTGCTGAAGACCGGGCAGAACCGCTTCGCCACGGTGTCCGGCAGCATGACCGATGTCATCCAC
CACAGCACCCAGCACTTCAGCGACGACGATCTGCTGGCCATCGCCAGCTACCTGAAGTCCCTGCCGGCCGGC
AAGGACGACCTGCCCATGCCCGACAGCGAACGCCCACTGGCAGCACCGGTCGACCTGTACAGCTCGCGGGGC
GGTCTCGGCTACGCGCAGTTCTGCTCCGACTGCCACCGCAAGGACGGCAGCGGCGTCCCGGGCATGTTCCCG
CCGCTGGCCGGCAACCCCACGGTCGCTTCGGCCAACCCGAGCACGCTACTGCATATCACCCTTACCGGTTGG
AAAACCGCGCAGACCGCAACCCACTCGCGGGTCTACACCATGCCCGGCTTCGCCCAGCTGGAAGACCGCGAA
ATCGCCGAGATCCTCAGCTTCGTCCGCAGCAGTTGGGGCAACCAGGGTTCGTCGATCGATGCCGGCCAGGTG
AAGAAACTGCGCCAGCGGATCGAGGCCGGCAACGGCCCGGCCACGACCTTCGTCTCTCCACGCCTGGCGGAC
ATGCTCGCGGCGCCGAACGCCGAACAGGTGGTACGCGGCATGCGCCTGCACCTGGAGACCCGCGAGCTGCTG
CCGGCGAACGTCGGCAACCAGTTGAACTGCACCAGTTGCCACCTGAACGCCGGAACCGTAGCCGACGGCTCG
CCCTTCGTCGGCGTCTCGGCGTTCTTCCCCAGCTACGCGCCCCGGGCGGGCAAGGTCATCGGCCTGGAGGAA
CGCATCAACGGCTGCTTCCGGCGCTCGATGAACGGTAAGCCTCTGCCGCCGGACTCTGCCGACATGCAGGCG
ATGGTGGCCTACTTCGACTGGATGAAGAACAACACCCGGCCGCAGGACAAGGTCGCCGGCCGCGGCGTCGGC
AAGGTCGACCCGGCGCTGAAGCCCGACCCGGAGAACGGCCGCAAGGTCTACGCCCGACAATGCGCGGTGTGT
CATGGCGAGAATGGCGAGGGGCTGAGGAACAGTGCCGGCGAGATGCTCTTCCCACCGCTGTGGGGCGACGAG
TCGTTCAATATCGGCGCCGGCATGGCGCGGACCTTCACCGCTGCCGCCTTCGTCAAGCACAACATGCCGATC
GGCTTCCAGGAACGCTTCCCGCTCGGCCAGGGCGGCCTCAGCGACCAGGACGCAGTGGACGTCGCGGAGTAC
TTTTCGCACCAGCCGCGCCCGGACTTCCCGGACAAGATCAAGGACTGGCCGAAGGACAAGCGTCCGCTGGAT
GCCCGCTACTGA
Translation:
MPASFPRLGLLGALCSIVPLLHASEPTTDAALIEKGRYVAQLGDCIACHTGPQGAPMAGGLELKTPMGTIYS
TNITPDRETGIGRYSFEEFDRAMRKGVTAEGVNLYPAMPYPSYAKISEEDMRALYAYLMHGVQPVTQANTPS
AMSWPFNQRWGLSLWNWAFLDDAPFTPSSDADPVINRGAYLVQGLGHCGACHTPRGIAFQEKAMSEAGRSGQ
FYLAGETVEQWQALSLRNLWTVEDTVQLLKTGQNRFATVSGSMTDVIHHSTQHFSDDDLLAIASYLKSLPAG
KDDLPMPDSERPLAAPVDLYSSRGGLGYAQFCSDCHRKDGSGVPGMFPPLAGNPTVASANPSTLLHITLTGW
KTAQTATHSRVYTMPGFAQLEDREIAEILSFVRSSWGNQGSSIDAGQVKKLRQRIEAGNGPATTFVSPRLAD
MLAAPNAEQVVRGMRLHLETRELLPANVGNQLNCTSCHLNAGTVADGSPFVGVSAFFPSYAPRAGKVIGLEE
RINGCFRRSMNGKPLPPDSADMQAMVAYFDWMKNNTRPQDKVAGRGVGKVDPALKPDPENGRKVYARQCAVC
HGENGEGLRNSAGEMLFPPLWGDESFNIGAGMARTFTAAAFVKHNMPIGFQERFPLGQGGLSDQDAVDVAEY
FSHQPRPDFPDKIKDWPKDKRPLDARY*
AnnotationID:304GeneID:294
AnnotatorUID: diggins
Modification Date/Time: 2005-05-05 08:08:25
Gene Name:
Confidence Code:3
GeneProduct:putative cytochrome c precursor
Cell Localization:()
Synonyms:PA4571
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3258
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN68986.1|AE016530_9 (AE016786) gluconate dehydrogenase cytochrome c subunit, putative
           [Pseudomonas putida KT2440]
          Length = 417

 Score =  389 bits (1000), Expect = e-107
 Identities = 201/402 (50%), Positives = 264/402 (65%), Gaps = 15/402 (3%)

>dbj|BAA02993.1| (D13893) cytochrome c subunit of alcohol dehydrogenase [Acetobacter
           pasteurianus]
          Length = 472

 Score =  361 bits (926), Expect = 9e-99
 Identities = 186/398 (46%), Positives = 245/398 (61%), Gaps = 16/398 (4%)






 
Structural Features:
COG3258, Cytochrome c [Energy production and conversion]
CD-Length = 293 residues,  93.9% aligned
Score =  361 bits (928), Expect = 3e-100
Identities = 137/279 (49%), Positives = 162/279 (58%), Gaps = 12/279 (4%)






   
Genomic Context:






   
Comment:


















    ReferenceID:591




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17733




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31643




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:294_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:294
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
483
                           PA4571_tr
                           translation of PA4571
                           675
                           99.70
                           99.85
                           0
                           3599.0
     

     
     
24794
                           gb|AAG07959.1|AE004870_10
                           (AE004870) probable cytochrome c [Pseudomonas aeruginosa PAO1]
                           675
                           99.70
                           99.85
                           0
                           3599.0
     

     
     
24795
                           emb|CAE27444.1|
                           (BX572599) probable cytochrome c precursor [Rhodopseudomonas palustris CGA009]
                           705
                           63.26
                           76.02
                           46
                           2380.0
     

     
     
484
                           PA2266_tr
                           translation of PA2266
                           691
                           30.68
                           39.65
                           268
                           1023.0
     

     
     
24796
                           gb|AAG05654.1|AE004652_7
                           (AE004652) probable cytochrome c precursor [Pseudomonas aeruginosa PAO1]
                           691
                           30.68
                           39.65
                           268
                           1023.0
     

     






      

          
GC ORFID: 43296How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4571Glimmer Score: 

          
Start: 4654683Stop: 4656710

          
Length: 2028


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4571 translation of PA4571Homolog Bit Score 1390.0

          
Other Homologs:  t_PA4571 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCTGCTTCTTTCCCGCGCCTCGGCTTGCTCGGCGCGCTGTGCTCCATCGTTCCCCTGCTCCATGCCAGC 
GAACCGACCACGGACGCTGCGCTCATCGAAAAAGGCCGCTACGTGGCCCAGCTCGGCGACTGCATCGCCTGC 
CATACCGGCCCGCAGGGCGCGCCGATGGCCGGCGGCCTGGAGCTGAAGACGCCAATGGGTACCATCTACTCG 
ACCAACATCACTCCCGACCGGGAGACCGGCATCGGCCGCTACAGCTTCGAAGAGTTCGACCGCGCCATGCGC 
AAGGGGGTGACCGCCGAGGGAGTGAATCTCTATCCGGCGATGCCCTACCCGTCCTACGCCAAGATCAGCGAA 
GAAGACATGCGTGCGCTGTACGCCTACCTGATGCACGGCGTGCAACCCGTCACCCAGGCGAATACGCCGAGC 
GCGATGAGCTGGCCGTTCAACCAGCGCTGGGGCCTGTCGCTGTGGAACTGGGCGTTCCTCGACGACGCGCCG 
TTCACCCCCTCCAGCGACGCGGACCCGGTGATCAACCGCGGCGCCTACCTGGTACAGGGGCTCGGCCACTGC 
GGCGCCTGCCATACTCCGCGCGGCATCGCCTTCCAGGAAAAAGCCATGAGCGAAGCCGGTCGTTCCGGGCAG 
TTCTACCTCGCCGGAGAAACCGTCGAACAATGGCAAGCCCTGAGCCTGCGCAACCTGTGGACGGTGGAGGAC 
ACCGTGCAGTTGCTGAAGACCGGGCAGAACCGCTTCGCCACGGTGTCCGGCAGCATGACCGATGTCATCCAC 
CACAGCACCCAGCACTTCAGCGACGACGATCTGCTGGCCATCGCCAGCTACCTGAAGTCCCTGCCGGCCGGC 
AAGGACGACCTGCCCATGCCCGACAGCGAACGCCCACTGGCAGCACCGGTCGACCTGTACAGCTCGCGGGGC 
GGTCTCGGCTACGCGCAGTTCTGCTCCGACTGCCACCGCAAGGACGGCAGCGGCGTCCCGGGCATGTTCCCG 
CCGCTGGCCGGCAACCCCACGGTCGCTTCGGCCAACCCGAGCACGCTACTGCATATCACCCTTACCGGTTGG 
AAAACCGCGCAGACCGCAACCCACTCGCGGGTCTACACCATGCCCGGCTTCGCCCAGCTGGAAGACCGCGAA 
ATCGCCGAGATCCTCAGCTTCGTCCGCAGCAGTTGGGGCAACCAGGGTTCGTCGATCGATGCCGGCCAGGTG 
AAGAAACTGCGCCAGCGGATCGAGGCCGGCAACGGCCCGGCCACGACCTTCGTCTCTCCACGCCTGGCGGAC 
ATGCTCGCGGCGCCGAACGCCGAACAGGTGGTACGCGGCATGCGCCTGCACCTGGAGACCCGCGAGCTGCTG 
CCGGCGAACGTCGGCAACCAGTTGAACTGCACCAGTTGCCACCTGAACGCCGGAACCGTAGCCGACGGCTCG 
CCCTTCGTCGGCGTCTCGGCGTTCTTCCCCAGCTACGCGCCCCGGGCGGGCAAGGTCATCGGCCTGGAGGAA 
CGCATCAACGGCTGCTTCCGGCGCTCGATGAACGGTAAGCCTCTGCCGCCGGACTCTGCCGACATGCAGGCG 
ATGGTGGCCTACTTCGACTGGATGAAGAACAACACCCGGCCGCAGGACAAGGTCGCCGGCCGCGGCGTCGGC 
AAGGTCGACCCGGCGCTGAAGCCCGACCCGGAGAACGGCCGCAAGGTCTACGCCCGACAATGCGCGGTGTGT 
CATGGCGAGAATGGCGAGGGGCTGAGGAACAGTGCCGGCGAGATGCTCTTCCCACCGCTGTGGGGCGACGAG 
TCGTTCAATATCGGCGCCGGCATGGCGCGGACCTTCACCGCTGCCGCCTTCGTCAAGCACAACATGCCGATC 
GGCTTCCAGGAACGCTTCCCGCTCGGCCAGGGCGGCCTCAGCGACCAGGACGCAGTGGACGTCGCGGAGTAC 
TTTTCGCACCAGCCGCGCCCGGACTTCCCGGACAAGATCAAGGACTGGCCGAAGGACAAGCGTCCGCTGGAT 
GCCCGCTACTGA