ViewGene

Locus Name:
GeneID:
Location:

GeneID: 2939

TrivialName: PA14_55060

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_55060

PAO1 Ortholog Locus: PA0987

Sequence Length: 843

Protein Length: 280

Start: 4892103

Stop: 4891261

Strand: -

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG04376.1|AE004531_13 (AE004531) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] Identities = 263/280 (93%), Positives = 270/280 (96%)

Sequence:

ATGCAGGCGCGAACCGGCATCTCCGAGCGTCGTGCCTGTCAGTTGATCGGGCTGTCCCGCTCGGTGTTGCGC
TACCAGCCGCGAGCCAGTGTGCAAAACACCGAGCTGCAAGCCCAACTGGTGGAACTGGCCCAAGAGCGCCGG
CGCTTTGGCTATCGCCGCCTGCACATCCTGCTGCGGCGTGCTGGCGTGCAGGTCAACCACAAGCGGATCTAT
CGCCTGTACCGCGCTGCCGGCTTGATGGTGAAACGGCGGCGGCGCCGCCATGGCGTCGCGGTGGAGCGCGAA
CGTCTGAGTTTGCCGAGCGCGCCGAATCAGGTGTGGTCGATGGACTTCGTCTTCGATGCGCTCAGTACGGGG
CGGAGGATTAAATGCCTGACGGTGGTCGATGACTTTACCAGGGAGGCGGTGGGTATCCTTGTGGATCACGGC
ATCAGCGGCTTTCGCGTTACTCGCGCACTGGATGAAATGGCTCGGTTCCGCGGTTACCCGACAGCAATCCGC
ACCGACCAGGGCCCCGAATTCACTGGCAAGGCACTCGATCAATGGGCCTATCAGCGCGATATCAAGCTGAAG
CTGACCCAGCCTGGCAAACCCACACAGAATGCGTTCATCGAGTCCTTCAACGGCAAGTTTCGAGACGAATGC
CTGAATGAGTACTGGTTCTGCTCACTGGCCGAGGCCAGAATTCGCATCGCAGCCTGGCGGAGGGATTACAAC
GAGCACCGACCGCATAGCGCTATCGGCAATCTCACCCCAGCGAAGTTTGCTGCGAAATGGCGGGCGAGTCAG
CAGCAACCACGACATGAAAAATTGATATCAACCCCAGGACGTACTAACTAG

Translation:

MQARTGISERRACQLIGLSRSVLRYQPRASVQNTELQAQLVELAQERRRFGYRRLHILLRRAGVQVNHKRIY
RLYRAAGLMVKRRRRRHGVAVERERLSLPSAPNQVWSMDFVFDALSTGRRIKCLTVVDDFTREAVGILVDHG
ISGFRVTRALDEMARFRGYPTAIRTDQGPEFTGKALDQWAYQRDIKLKLTQPGKPTQNAFIESFNGKFRDEC
LNEYWFCSLAEARIRIAAWRRDYNEHRPHSAIGNLTPAKFAAKWRASQQQPRHEKLISTPGRTN*

AnnotationID:2947 GeneID:2939

AnnotatorUID: danlee

Modification Date/Time: 2005-10-04 16:04:13

Gene Name:

Confidence Code: 4

GeneProduct: conserved hypothetical protein

Cell Localization: ()

Synonyms: PA0987

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (22) Related to phage, transposon, or plasmid

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs: pfam00665, COG2801

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

gi|17427840|emb|CAD14530.1|  ISRSO14-TRANSPOSASE ORFB PROTEIN [Ralstonia solanacearum]
gi|17549438|ref|NP_522778.1|  ISRSO14-TRANSPOSASE ORFB PROTEIN [Ralstonia solanacearum GMI1000]
     Length=275
     Score =  390 bits (1003),  Expect = 2e-107
     Identities = 187/267 (70%), Positives = 221/267 (82%), Gaps = 0/267 (0%)

gi|71847665|gb|AAZ47161.1|  Integrase, catalytic region [Dechloromonas aromatica RCB]
gi|53730659|ref|ZP_00151442.2|  COG2801: Transposase and inactivated derivatives [Dechloromonas aromatica RCB]
     Length=276
     Score =  389 bits (1000),  Expect = 4e-107
     Identities = 186/262 (70%), Positives = 221/262 (84%), Gaps = 0/262 (0%)

Structural Features:

pfam00665, rve, Integrase core domain.
             CD-Length = 160 residues,  98.1% aligned
             Score =  109 bits (273), Expect = 4e-25

COG2801, Tra5, Transposase and inactivated derivatives [DNA replication, recombination, and repair].
             CD-Length = 232 residues,  98.7% aligned
             Score = 60.4 bits (144), Expect = 2e-10

Genomic Context:

The gene pair PA0986 and PA0987 appear in two positions in the PA14 genome:
here and at GeneIDs 5280 and 2907 (Trivial Names PA14_03180 and PA14_03170,
respectively).  Neither of these two locations are in the genomic context 
found in PAO1.

Comment:

ReferenceID:5881

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:23023

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

Homologs By Global Alignment

Gene ID:2939

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

4755 PA0987_tr translation of PA0987 280 93.92 96.42 0 1376.0

136394 gb|AAG04376.1|AE004531_13 (AE004531) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 280 93.92 96.42 0 1376.0

136395 emb|CAD18368.1| (AL646083) ISRSO14-TRANSPOSASE ORFB PROTEIN [Ralstonia solanacearum] 282 66.31 79.07 9 1000.0

136396 emb|CAD16112.1| (AL646070) ISRSO14-TRANSPOSASE ORFB PROTEIN [Ralstonia solanacearum] 282 66.31 79.07 9 1000.0

136397 emb|CAD15194.1| (AL646064) ISRSO14-TRANSPOSASE ORFB PROTEIN [Ralstonia solanacearum] 282 66.31 79.07 9 1000.0

GC ORFID: `45941`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA0987`	Glimmer Score:
Start: `61804`	Stop: `62646`
Length: `843`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TAG`	Truncated Stop:
Homolog: `t_PA0987 translation of PA0987`	Homolog Bit Score `534.0`
Other Homologs: `t_RS13 (ORF: BLASTX 312.0), t_PA0987 (ORF: GLIMMER)`
GC ORF Sequence
ATGCAGGCGCGAACCGGCATCTCCGAGCGTCGTGCCTGTCAGTTGATCGGGCTGTCCCGCTCGGTGTTGCGC TACCAGCCGCGAGCCAGTGTGCAAAACACCGAGCTGCAAGCCCAACTGGTGGAACTGGCCCAAGAGCGCCGG CGCTTTGGCTATCGCCGCCTGCACATCCTGCTGCGGCGTGCTGGCGTGCAGGTCAACCACAAGCGGATCTAT CGCCTGTACCGCGCTGCCGGCTTGATGGTGAAACGGCGGCGGCGCCGCCATGGCGTCGCGGTGGAGCGCGAA CGTCTGAGTTTGCCGAGCGCGCCGAATCAGGTGTGGTCGATGGACTTCGTCTTCGATGCGCTCAGTACGGGG CGGAGGATTAAATGCCTGACGGTGGTCGATGACTTTACCAGGGAGGCGGTGGGTATCCTTGTGGATCACGGC ATCAGCGGCTTTCGCGTTACTCGCGCACTGGATGAAATGGCTCGGTTCCGCGGTTACCCGACAGCAATCCGC ACCGACCAGGGCCCCGAATTCACTGGCAAGGCACTCGATCAATGGGCCTATCAGCGCGATATCAAGCTGAAG CTGACCCAGCCTGGCAAACCCACACAGAATGCGTTCATCGAGTCCTTCAACGGCAAGTTTCGAGACGAATGC CTGAATGAGTACTGGTTCTGCTCACTGGCCGAGGCCAGAATTCGCATCGCAGCCTGGCGGAGGGATTACAAC GAGCACCGACCGCATAGCGCTATCGGCAATCTCACCCCAGCGAAGTTTGCTGCGAAATGGCGGGCGAGTCAG CAGCAACCACGACATGAAAAATTGATATCAACCCCAGGACGTACTAACTAG