ViewGene

Locus Name:
GeneID:
Location:

GeneID:2938
TrivialName: PA14_72400
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_72400
PAO1 Ortholog Locus:PA5485
Sequence Length:780
Protein Length:259
Start: 6450206
Stop: 6449427
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08870.1|AE004961_5 (AE004961) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 259/259 (100%), Positives = 259/259 (100%)
Sequence:
ATGCGTTCGTTCGTTCTACTGGCTTTCACCCTGTCGCTGCTGGCCGGCTGCTCCAGCGGCCCGCGCCTGAAT
ACCGACTACACCTCGGCGAACCAGGACAGCCGTGTCCAGTTCATCGTCCTCCACTACACCTCCACCGATCTG
CCGCATTCGCTGGGCATCCTCACCCACGGTGGCGTCAGCGCGCACTACCTGATCGGCGACGACGAGCCGGCC
ACCGTCTACCGCCTGGTGGATGAGAACCGCCGCGCCTGGCACGCCGGGGTCAGTGAATGGCAGGGCCGGACC
TGGCTGAACGCCACCTCGATCGGCATCGAGATCGTCAACCAGGGCTATCGCGATACACCCCAGGGGCGGGTC
TGGTATCCGTTCAGCGAAGCGCAGATCCAGGCGCTGATCCCCCTGCTGAAGGACATCGCCAAGCGCCACGGC
ATCACCCCGGACCGGATCATCGGACACAGCGATATCGCGCCGGGCCGCAAGGTCGATCCGGGTCCGCTGTTC
CCCTGGAAGCGCCTCGCCGACGCCGGCCTGGTGCCCTGGCCGAAGCCCGGCGAATTGGCGCGCCGGCTCGCC
GAACTGAACGGCCAGCTGCCGGATGTGCGCTGGTTCCAGCAGCAGTTGGCGCGGCACGGTTACCTGGTGCCG
CAGACCGGCGAGCTGGAGAAGGACACCCGCGACGTCATCGGCGCTTTCCAGATGAAATACCGTCCGGCCCGC
TTCGATGGCGAGCCGGACCTGGAAACCGCCGCCCTGCTGCTGGCGGTGCCGACTTCCTGA
Translation:
MRSFVLLAFTLSLLAGCSSGPRLNTDYTSANQDSRVQFIVLHYTSTDLPHSLGILTHGGVSAHYLIGDDEPA
TVYRLVDENRRAWHAGVSEWQGRTWLNATSIGIEIVNQGYRDTPQGRVWYPFSEAQIQALIPLLKDIAKRHG
ITPDRIIGHSDIAPGRKVDPGPLFPWKRLADAGLVPWPKPGELARRLAELNGQLPDVRWFQQQLARHGYLVP
QTGELEKDTRDVIGAFQMKYRPARFDGEPDLETAALLLAVPTS*
AnnotationID:2946GeneID:2938
AnnotatorUID: diggins
Modification Date/Time: 2005-03-21 07:07:29
Gene Name:
Confidence Code:3
GeneProduct:putative N-acetylmuramoyl-L-alanine amidase family protein
Cell Localization:()
Synonyms:PA5485
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:putative beta-lactamase regulator
Functional Category Confidence Code:5
COGs:COG3023
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAO53883.1| (AE016857) N-acetylmuramoyl-L-alanine amidase, family 2
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 259

 Score =  341 bits (874), Expect = 3e-93
 Identities = 163/248 (65%), Positives = 193/248 (77%)

>gb|AAN65764.1|AE016202_7 (AE016774) N-acetylmuramoyl-L-alanine amidase family protein
           [Pseudomonas putida KT2440]
          Length = 262

 Score =  338 bits (867), Expect = 2e-92
 Identities = 162/248 (65%), Positives = 197/248 (79%), Gaps = 1/248 (0%)

>emb|CAE35738.1| (BX640448) putative exported hydrolase [Bordetella bronchiseptica]
          Length = 275

 Score =  273 bits (697), Expect = 9e-73
 Identities = 143/262 (54%), Positives = 178/262 (67%), Gaps = 16/262 (6%)
Structural Features:
COG3023, AmpD, Negative regulator of beta-lactamase expression 
[Defense mechanisms]
CD-Length = 257 residues,  98.1% aligned
Score =  267 bits (685), Expect = 6e-73
Identities = 123/262 (46%), Positives = 156/262 (59%), Gaps = 23/262 (8%)

Genomic Context:
Comment:
ReferenceID:5879
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:23021
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:33236
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:2938_cdd.html
URL:
Homologs By Global Alignment
Gene ID:2938

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
4753 PA5485_tr translation of PA5485 259 99.99 99.99 0 1377.0
136358 gb|AAG08870.1|AE004961_5 (AE004961) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 259 99.99 99.99 0 1377.0
136360 gb|AAN65764.1|AE016202_7 (AE016774) N-acetylmuramoyl-L-alanine amidase family protein [Pseudomonas putida KT2440] 263 62.35 76.42 5 859.0
136359 gb|AAO53883.1| (AE016857) N-acetylmuramoyl-L-alanine amidase, family 2 [Pseudomonas syringae pv. tomato str. DC3000] 264 61.74 74.62 10 867.0
136361 emb|CAE35738.1| (BX640448) putative exported hydrolase [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50] 279 52.68 66.30 24 705.0
GC ORFID: 45940How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA5485Glimmer Score:
Start: 5713895Stop: 5713116
Length: 780
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA5485 translation of PA5485Homolog Bit Score 535.0
Other Homologs: psyr_15may02_Scaffold2_revised_gene3902 (ORF: BLASTX 346.0), t_PA0807 (ORF: BLASTX 156.0), t_PA5485 (ORF: GLIMMER)
GC ORF Sequence
ATGCGTTCGTTCGTTCTACTGGCTTTCACCCTGTCGCTGCTGGCCGGCTGCTCCAGCGGCCCGCGCCTGAAT
ACCGACTACACCTCGGCGAACCAGGACAGCCGTGTCCAGTTCATCGTCCTCCACTACACCTCCACCGATCTG
CCGCATTCGCTGGGCATCCTCACCCACGGTGGCGTCAGCGCGCACTACCTGATCGGCGACGACGAGCCGGCC
ACCGTCTACCGCCTGGTGGATGAGAACCGCCGCGCCTGGCACGCCGGGGTCAGTGAATGGCAGGGCCGGACC
TGGCTGAACGCCACCTCGATCGGCATCGAGATCGTCAACCAGGGCTATCGCGATACACCCCAGGGGCGGGTC
TGGTATCCGTTCAGCGAAGCGCAGATCCAGGCGCTGATCCCCCTGCTGAAGGACATCGCCAAGCGCCACGGC
ATCACCCCGGACCGGATCATCGGACACAGCGATATCGCGCCGGGCCGCAAGGTCGATCCGGGTCCGCTGTTC
CCCTGGAAGCGCCTCGCCGACGCCGGCCTGGTGCCCTGGCCGAAGCCCGGCGAATTGGCGCGCCGGCTCGCC
GAACTGAACGGCCAGCTGCCGGATGTGCGCTGGTTCCAGCAGCAGTTGGCGCGGCACGGTTACCTGGTGCCG
CAGACCGGCGAGCTGGAGAAGGACACCCGCGACGTCATCGGCGCTTTCCAGATGAAATACCGTCCGGCCCGC
TTCGATGGCGAGCCGGACCTGGAAACCGCCGCCCTGCTGCTGGCGGTGCCGACTTCCTGA