ViewGene

Locus Name:
GeneID:
Location:

GeneID:2937
TrivialName: PA14_70390
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_70390
PAO1 Ortholog Locus:PA5332
Sequence Length:780
Protein Length:259
Start: 6275040
Stop: 6275819
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08717.1|AE004946_1 (AE004946) catabolite repression control protein [Pseudomonas aeruginosa PAO1]
Identities = 259/259 (100%), Positives = 259/259 (100%)
Sequence:
ATGCGGATCATCAGTGTGAACGTGAATGGTATTCAGGCTGCGGCCGAGCGCGGTTTGCTCAGTTGGCTGCAA
GCACAGAATGCCGACGTGATCTGCTTGCAGGACACCCGAGCCTCCGCCTTCGATCTGGATGACCCGTCCTTC
CAACTGGACGGCTACTTCCTTTATGCCTGCGATGCCGAGCTACCCGAACAGGGCGGTGTCGCACTCTACAGC
CGTTTGCAGCCCAAAGCTGTGATCAGCGGCTTAGGTTTCGAAACGGCCGATCGTTACGGGCGCTACCTGCAA
GCCGACTTCGACAAGGTGAGTATCGCCACCCTGCTGCTGCCTTCCGGGCAGAGCGGAGACGAGAGCTTGAAC
CAGAAATTCAAGTTCATGGACGACTTCACCCATTACTTGAGCAAGCAGCGTCGCAAGCGCCGCGAATACATC
TATTGCGGCTCGCTATACGTCGCCCATCAGAAGATGGACGTGAAGAACTGGCGCGAATGCCAGCAGATGCCG
GGCTTCCTCGCGCCCGAACGGGCCTGGCTGGACGAAGTGTTCGGCAACCTCGGCTATGCCGACGCCCTGCGC
GAAGTCAGCCGCGAAGGCGACCAGTTCAGCTGGTGGCCGGACAGCGAACAGGCCGAGATGCTCAACCTCGGC
TGGCGCTTCGACTACCAGGTGCTGACCCCCGGCCTGCGCCGCTTCGTGCGCAACGCCAAGCTGCCGCGCCAG
CCGCGCTTCTCCCAGCATGCGCCGCTGATCGTCGACTACGACTGGCAACTGAGCATCTGA
Translation:
MRIISVNVNGIQAAAERGLLSWLQAQNADVICLQDTRASAFDLDDPSFQLDGYFLYACDAELPEQGGVALYS
RLQPKAVISGLGFETADRYGRYLQADFDKVSIATLLLPSGQSGDESLNQKFKFMDDFTHYLSKQRRKRREYI
YCGSLYVAHQKMDVKNWRECQQMPGFLAPERAWLDEVFGNLGYADALREVSREGDQFSWWPDSEQAEMLNLG
WRFDYQVLTPGLRRFVRNAKLPRQPRFSQHAPLIVDYDWQLSI*
AnnotationID:2945GeneID:2937
AnnotatorUID: diggins
Modification Date/Time: 2005-03-16 18:06:48
Gene Name:crc
Confidence Code:1
GeneProduct:catabolite repression control protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(11) DNA replication, recombination, modification and repair
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0708,pfam03372
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAO53633.1| (AE016856) exodeoxyribonuclease III, putative [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 259

 Score =  478 bits (1229), Expect = e-134
 Identities = 224/259 (86%), Positives = 242/259 (93%)

>gb|AAN70857.1|AE016730_3 (AE016794) catabolite repression control protein [Pseudomonas
           putida KT2440]
          Length = 259

 Score =  476 bits (1225), Expect = e-134
 Identities = 224/259 (86%), Positives = 243/259 (93%)

>gb|AAO89854.1| (AE016960) exodeoxyribonuclease III [Coxiella burnetii RSA 493]
          Length = 259

 Score =  236 bits (603), Expect = 7e-62
 Identities = 113/258 (43%), Positives = 165/258 (63%
Structural Features:
COG0708, XthA, Exonuclease III [DNA replication, recombination, and repair]
CD-Length = 261 residues, 100.0% aligned
Score =  247 bits (633), Expect = 7e-67
Identities = 86/264 (32%), Positives = 135/264 (51%), Gaps = 12/264 (4%)

pfam03372, Exo_endo_phos, 
Endonuclease/Exonuclease/phosphatase family. 
CD-Length = 252 residues, 100.0% aligned
Score =  113 bits (284), Expect = 1e-26
Identities = 58/265 (21%), Positives = 99/265 (37%), Gaps = 25/265 (9%)
Genomic Context:
Comment:
ReferenceID:5877
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:23019
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:34759
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:2937_cdd.html
URL:
ReferenceID:35695
Author/Investigator(s): MacGregor CH, Arora SK, Hager PW, Dail MB, Phibbs PV Jr.
Title: The nucleotide sequence of the Pseudomonas aeruginosa pyrE-crc-rph region and the purification of the crc gene product.
PubMed: 8824606
MedLine:
Source:
J Bacteriol. 1996 Oct;178(19):5627-35.
Reference Type:Journal
Data:
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=8824606
Homologs By Global Alignment
Gene ID:2937

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
4752 PA5332_tr translation of PA5332 259 99.99 99.99 0 1378.0
136347 gb|AAG08717.1|AE004946_1 (AE004946) catabolite repression control protein [Pseudomonas aeruginosa PAO1] 259 99.99 99.99 0 1378.0
136348 gb|AAC44428.1| (U38241) catabolite repression control protein [Pseudomonas aeruginosa] 259 99.99 99.99 0 1378.0
136349 gb|AAO53633.1| (AE016856) exodeoxyribonuclease III, putative [Pseudomonas syringae pv. tomato str. DC3000] 259 86.48 93.43 0 1229.0
136350 gb|AAN70857.1|AE016730_3 (AE016794) catabolite repression control protein [Pseudomonas putida KT2440] 259 86.48 93.82 0 1225.0
GC ORFID: 45939How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA5332Glimmer Score:
Start: 5538729Stop: 5539508
Length: 780
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA5332 translation of PA5332Homolog Bit Score 535.0
Other Homologs: psyr_15may02_Scaffold2_revised_gene3938 (ORF: BLASTX 478.0), t_PA5332 (ORF: GLIMMER)
GC ORF Sequence
ATGCGGATCATCAGTGTGAACGTGAATGGTATTCAGGCTGCGGCCGAGCGCGGTTTGCTCAGTTGGCTGCAA
GCACAGAATGCCGACGTGATCTGCTTGCAGGACACCCGAGCCTCCGCCTTCGATCTGGATGACCCGTCCTTC
CAACTGGACGGCTACTTCCTTTATGCCTGCGATGCCGAGCTACCCGAACAGGGCGGTGTCGCACTCTACAGC
CGTTTGCAGCCCAAAGCTGTGATCAGCGGCTTAGGTTTCGAAACGGCCGATCGTTACGGGCGCTACCTGCAA
GCCGACTTCGACAAGGTGAGTATCGCCACCCTGCTGCTGCCTTCCGGGCAGAGCGGAGACGAGAGCTTGAAC
CAGAAATTCAAGTTCATGGACGACTTCACCCATTACTTGAGCAAGCAGCGTCGCAAGCGCCGCGAATACATC
TATTGCGGCTCGCTATACGTCGCCCATCAGAAGATGGACGTGAAGAACTGGCGCGAATGCCAGCAGATGCCG
GGCTTCCTCGCGCCCGAACGGGCCTGGCTGGACGAAGTGTTCGGCAACCTCGGCTATGCCGACGCCCTGCGC
GAAGTCAGCCGCGAAGGCGACCAGTTCAGCTGGTGGCCGGACAGCGAACAGGCCGAGATGCTCAACCTCGGC
TGGCGCTTCGACTACCAGGTGCTGACCCCCGGCCTGCGCCGCTTCGTGCGCAACGCCAAGCTGCCGCGCCAG
CCGCGCTTCTCCCAGCATGCGCCGCTGATCGTCGACTACGACTGGCAACTGAGCATCTGA