ViewGene
Locus Name:
GeneID:
Location:

GeneID:2936
TrivialName: PA14_61290
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_61290
PAO1 Ortholog Locus:PA4632
Sequence Length:822
Protein Length:273
Start: 5472303
Stop: 5471482
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08020.1|AE004877_7 (AE004877) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 271/273 (99%), Positives = 272/273 (99%)
Sequence:
ATGGCTCATCCCTTCCGATTCGCCACCCTCGCCGGCGCGCTGCTGCTCGCCGGTTGCCAGGCAGTGAACACC
ACCAGCGGCGGCGCCGTCGGCGTCGACCGCAAGCAATACATGTTCAGCATGTTGTCCAGCCAGGAAGTCGAC
CAGATGTACGCCCAGTCGTACCAGAAGACTCTCGGCGAGGCGAAAAGCGCCGGCGTGCTCGATACCAGCAGT
GCCGACGCGCGGCGAGTCAAGGCGATCGCCCAGCGGCTGATCCCGCAGACCGCCGCCTTCCGCCCGGACGCC
ACCAGCTGGAACTGGGAAGTCAACGTGGTGAAGAGCGACGAACTCAACGCCAACTGCGGTCCCGGCGGCAAG
ATCATTTTCTACACCGGGCTGATCGACAAGCTGAAGCTCACCGACGACGAGATCGCCGCGGTGATGGGCCAC
GAGATCGCTCACGCCCTGCGCGAGCATGGGCGCGAGGCCATGTCCAAGGCCTACGGCGTGCAGGTGGCCAGC
CAGATCGGCGCCCTGGCCGGCCTCGGCCAGGAAAGCCTGCAACTGGCCAATACCGGCGTCGACTACCTGATG
ACCCTGCCCAACAGTCGTGCCAACGAGAACGAAGCCGACCTGATCGGTCTCGAGCTGGCCGCCCGCGCCGGC
TACAACCCGGAAGCGGCGATCACCCTCTGGCAGAAGATGGGCAAGGCCAGCGGCGGTGCCAGCCAGCCCGAG
TTCACCAGCACCCACCCCTCCGACAGTTCGCGGATGGCCAATCTCCAGGCCGCGATTCCCAAGGTGATGCCG
CTGTACCAGCAGGCCAGGCGCGGCAAGTGA
Translation:
MAHPFRFATLAGALLLAGCQAVNTTSGGAVGVDRKQYMFSMLSSQEVDQMYAQSYQKTLGEAKSAGVLDTSS
ADARRVKAIAQRLIPQTAAFRPDATSWNWEVNVVKSDELNANCGPGGKIIFYTGLIDKLKLTDDEIAAVMGH
EIAHALREHGREAMSKAYGVQVASQIGALAGLGQESLQLANTGVDYLMTLPNSRANENEADLIGLELAARAG
YNPEAAITLWQKMGKASGGASQPEFTSTHPSDSSRMANLQAAIPKVMPLYQQARRGK*
AnnotationID:2944GeneID:2936
AnnotatorUID: diggins
Modification Date/Time: 2005-06-15 09:09:37
Gene Name:
Confidence Code:3
GeneProduct:putative lipoprotein
Cell Localization:()
Synonyms:PA4632
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:putative peptidase
Functional Category Confidence Code:5
COGs:pfam01435,COG0501
Secondary Functional Category(ies):putative enzyme
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN66384.1|AE016266_6 (AE016776) conserved hypothetical protein [Pseudomonas putida
           KT2440]
          Length = 279

 Score =  397 bits (1019), Expect = e-110
 Identities = 203/272 (74%), Positives = 232/272 (85%), Gaps = 2/272 (0%)

>gb|AAO54673.1| (AE016859) lipoprotein, putative [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 272

 Score =  395 bits (1016), Expect = e-109
 Identities = 199/272 (73%), Positives = 231/272 (84%), Gaps = 2/272 (0%)






 
Structural Features:
pfam01435, Peptidase_M48, Peptidase family M48.
CD-Length = 191 residues, 100.0% aligned
Score =  144 bits (365), Expect = 2e-35
Identities = 72/192 (37%), Positives = 97/192 (50%), Gaps = 21/192 (10%)

COG0501, HtpX, Zn-dependent protease with chaperone function 
[Posttranslational modification, protein turnover, chaperones]
CD-Length = 302 residues,  87.7% aligned
Score =  100 bits (249), Expect = 4e-22
Identities = 62/282 (21%), Positives = 98/282 (34%), Gaps = 45/282 (15%)






   
Genomic Context:






   
Comment:


















    ReferenceID:5875




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23017




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31590




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2936_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2936
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4751
                           PA4632_tr
                           translation of PA4632
                           273
                           99.26
                           99.63
                           0
                           1377.0
     

     
     
136337
                           gb|AAG08020.1|AE004877_7
                           (AE004877) hypothetical protein PA4632 [Pseudomonas aeruginosa PAO1]
                           273
                           99.26
                           99.63
                           0
                           1377.0
     

     
     
136339
                           gb|AAO54673.1|
                           (AE016859) lipoprotein, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           274
                           72.62
                           84.30
                           3
                           1020.0
     

     
     
136338
                           gb|AAN66384.1|AE016266_6
                           (AE016776) conserved hypothetical protein [Pseudomonas putida KT2440]
                           281
                           72.24
                           82.56
                           10
                           1021.0
     

     
     
136343
                           gb|AAQ57832.1|
                           (AE016910) conserved hypothetical protein [Chromobacterium violaceum ATCC 12472]
                           278
                           53.95
                           71.94
                           10
                           699.0
     

     






      

          
GC ORFID: 45938How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4632Glimmer Score: 

          
Start: 4735983Stop: 4735162

          
Length: 822


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4632 translation of PA4632Homolog Bit Score 535.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene4319 (ORF: BLASTX 403.0), t_PA4632 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCTCATCCCTTCCGATTCGCCACCCTCGCCGGCGCGCTGCTGCTCGCCGGTTGCCAGGCAGTGAACACC 
ACCAGCGGCGGCGCCGTCGGCGTCGACCGCAAGCAATACATGTTCAGCATGTTGTCCAGCCAGGAAGTCGAC 
CAGATGTACGCCCAGTCGTACCAGAAGACTCTCGGCGAGGCGAAAAGCGCCGGCGTGCTCGATACCAGCAGT 
GCCGACGCGCGGCGAGTCAAGGCGATCGCCCAGCGGCTGATCCCGCAGACCGCCGCCTTCCGCCCGGACGCC 
ACCAGCTGGAACTGGGAAGTCAACGTGGTGAAGAGCGACGAACTCAACGCCAACTGCGGTCCCGGCGGCAAG 
ATCATTTTCTACACCGGGCTGATCGACAAGCTGAAGCTCACCGACGACGAGATCGCCGCGGTGATGGGCCAC 
GAGATCGCTCACGCCCTGCGCGAGCATGGGCGCGAGGCCATGTCCAAGGCCTACGGCGTGCAGGTGGCCAGC 
CAGATCGGCGCCCTGGCCGGCCTCGGCCAGGAAAGCCTGCAACTGGCCAATACCGGCGTCGACTACCTGATG 
ACCCTGCCCAACAGTCGTGCCAACGAGAACGAAGCCGACCTGATCGGTCTCGAGCTGGCCGCCCGCGCCGGC 
TACAACCCGGAAGCGGCGATCACCCTCTGGCAGAAGATGGGCAAGGCCAGCGGCGGTGCCAGCCAGCCCGAG 
TTCACCAGCACCCACCCCTCCGACAGTTCGCGGATGGCCAATCTCCAGGCCGCGATTCCCAAGGTGATGCCG 
CTGTACCAGCAGGCCAGGCGCGGCAAGTGA