ViewGene
Locus Name:
GeneID:
Location:

GeneID:2934
TrivialName: PA14_20450
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_20450
PAO1 Ortholog Locus:PA3372
Sequence Length:771
Protein Length:256
Start: 1758145
Stop: 1758915
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06760.1|AE004759_7 (AE004759) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 255/256 (99%), Positives = 256/256 (100%)
Sequence:
ATGCGCCTGACCCTGCTCGGCACCGGCGATGCCCGCCAGGTGCCGGTCTACGGTTGCGATTGCCCGGCCTGT
CGCAACGCCCGCGCCGACGCCGGCCTGCGTCGCCGTCCCTGTAGCGCGCTGCTGGAGTGCGCCGGCCAGCGC
TGGCTGATCGACAGCGGCCTGGTCGATCTCTGCGAGCGCTTCCCGCCCCATAGCCTCGACGGCATCCTCCAG
ACCCATTACCACGCCGACCACGCCCAAGGCCTGCTGCACCTGCGCTGGGGCCAGGGCCTGGTGATCCCGGTG
CATGGCCCGGCCGACCCGGAGGGCCTCGCCGACCTCTACAAGCATCCGGGCATCCTCGATTTCAGCCAGCCC
TTCGGCGCCTTCGAGCGGCGCCAGTGGGGCGCGCTGGCGGCGACCGCGCTACCGCTGGTCCACTCGAAGCCG
ACCTTCGGCTACTTGCTGGAGGGGGCTTCCGAGGAGGGAACGATACGGCGTCTGGCCTACCTCACCGATACC
GTCGGGCTGCCGGCGGACAGCGCCTCGCGATTGCTCGCGGCGCCGCTGGACCTGCTGGTGCTGGACTGCTCG
ATGCCGCCGCAGGAGCGGCCGCCGCGCAACCACAACGACCTGACGCGGGCACTGGAGTGCATCGAATCGCTG
CGTCCCCGGCGGGCCGTGTTGACTCACGTCGGGCATGCGCTGGACGCCTGGCTGCTGGACCACCCCGCTGCG
TTGCCCGAGGGGGTGGAACTGGCACACGACGGGATGTGCCTGCCGCTGTGA
Translation:
MRLTLLGTGDARQVPVYGCDCPACRNARADAGLRRRPCSALLECAGQRWLIDSGLVDLCERFPPHSLDGILQ
THYHADHAQGLLHLRWGQGLVIPVHGPADPEGLADLYKHPGILDFSQPFGAFERRQWGALAATALPLVHSKP
TFGYLLEGASEEGTIRRLAYLTDTVGLPADSASRLLAAPLDLLVLDCSMPPQERPPRNHNDLTRALECIESL
RPRRAVLTHVGHALDAWLLDHPAALPEGVELAHDGMCLPL*
AnnotationID:2942GeneID:2934
AnnotatorUID: danlee
Modification Date/Time: 2005-07-29 14:02:04
Gene Name:phnP
Confidence Code:3
GeneProduct:putative phosphonate metabolism protein
Cell Localization:()
Synonyms:PA3372
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1235
Secondary Functional Category(ies):central intermediary metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO56072.1| (AE016865) phosphonate metabolism protein, PhnP [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 249

 Score =  390 bits (1001), Expect = e-108
 Identities = 189/254 (74%), Positives = 206/254 (81%), Gaps = 5/254 (1%)

>gb|AAM84307.1|AE013674_3 (AE013674) phosphonate metabolism [Yersinia pestis KIM]
          Length = 250

 Score =  268 bits (685), Expect = 2e-71
 Identities = 139/256 (54%), Positives = 169/256 (66%), Gaps = 7/256 (2%)

>gb|AAA24356.1| (J05260) phnP protein [Escherichia coli]
          Length = 252

 Score =  228 bits (581), Expect = 3e-59
 Identities = 122/255 (47%), Positives = 156/255 (61%), Gaps = 13/255 (5%)






 
Structural Features:
COG1235, PhnP, Metal-dependent hydrolases of the 
beta-lactamase superfamily I
CD-Length = 269 residues,  97.4% aligned
Score =  171 bits (433), Expect = 9e-44
Identities = 85/271 (31%), Positives = 105/271 (38%), Gaps = 24/271 (8%)






   
Genomic Context:






   
Comment:


















    ReferenceID:5871




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23013




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32190




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2934_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2934
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4749
                           PA3372_tr
                           translation of PA3372
                           256
                           99.60
                           99.99
                           0
                           1379.0
     

     
     
136308
                           gb|AAG06760.1|AE004759_7
                           (AE004759) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           256
                           99.60
                           99.99
                           0
                           1379.0
     

     
     
136309
                           gb|AAO56072.1|
                           (AE016865) phosphonate metabolism protein, PhnP [Pseudomonas syringae pv. tomato str. DC3000]
                           256
                           73.82
                           80.46
                           7
                           1005.0
     

     
     
136310
                           gb|AAM84307.1|AE013674_3
                           (AE013674) phosphonate metabolism [Yersinia pestis KIM]
                           257
                           54.08
                           65.75
                           8
                           691.0
     

     
     
136311
                           emb|CAC92694.1|
                           (AJ414157) PhnP protein [Yersinia pestis CO92]
                           257
                           54.08
                           65.75
                           8
                           691.0
     

     






      

          
GC ORFID: 45936How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3372Glimmer Score: 

          
Start: 3195787Stop: 3195017

          
Length: 771


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3372 translation of PA3372Homolog Bit Score 535.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene1228 (ORF: BLASTX 399.0), t_PA3372 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGCCTGACCCTGCTCGGCACCGGCGATGCCCGCCAGGTGCCGGTCTACGGTTGCGATTGCCCGGCCTGT 
CGCAACGCCCGCGCCGACGCCGGCCTGCGTCGCCGTCCCTGTAGCGCGCTGCTGGAGTGCGCCGGCCAGCGC 
TGGCTGATCGACAGCGGCCTGGTCGATCTCTGCGAGCGCTTCCCGCCCCATAGCCTCGACGGCATCCTCCAG 
ACCCATTACCACGCCGACCACGCCCAAGGCCTGCTGCACCTGCGCTGGGGCCAGGGCCTGGTGATCCCGGTG 
CATGGCCCGGCCGACCCGGAGGGCCTCGCCGACCTCTACAAGCATCCGGGCATCCTCGATTTCAGCCAGCCC 
TTCGGCGCCTTCGAGCGGCGCCAGTGGGGCGCGCTGGCGGCGACCGCGCTACCGCTGGTCCACTCGAAGCCG 
ACCTTCGGCTACTTGCTGGAGGGGGCTTCCGAGGAGGGAACGATACGGCGTCTGGCCTACCTCACCGATACC 
GTCGGGCTGCCGGCGGACAGCGCCTCGCGATTGCTCGCGGCGCCGCTGGACCTGCTGGTGCTGGACTGCTCG 
ATGCCGCCGCAGGAGCGGCCGCCGCGCAACCACAACGACCTGACGCGGGCACTGGAGTGCATCGAATCGCTG 
CGTCCCCGGCGGGCCGTGTTGACTCACGTCGGGCATGCGCTGGACGCCTGGCTGCTGGACCACCCCGCTGCG 
TTGCCCGAGGGGGTGGAACTGGCACACGACGGGATGTGCCTGCCGCTGTGA