ViewGene
Locus Name:
GeneID:
Location:

GeneID:2932
TrivialName: PA14_21150
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_21150
PAO1 Ortholog Locus:PA3315
Sequence Length:834
Protein Length:277
Start: 1829613
Stop: 1828780
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06703.1|AE004753_11 (AE004753) probable permease of ABC transporter [Pseudomonas aeruginosa PAO1]
Identities = 275/277 (99%), Positives = 275/277 (99%)
Sequence:
ATGCTGAACGCCGCTTCTCCACCGCGCGATCCCGCCGCCCTGCCGCGCCTGCTGCTGACCCTGGCCGCGTTG
CTGCTGCTCTGGCCGGGGCTGCGCCTCAGCGAACTGGATATCCCCGGCCTGTTCAGCGGCGACAACGCGCGC
ACCATGGGCGGTTTCCTCGCCGGCTTCTGGCCGCTGGCGCACGATCCCGAGTTCCTCGCCCTGCTCGGCCGC
GCGACCCTGGAAACCCTCGCCATCGCCACCGCCGGCATGGCCCTGGCCTGGCTCCTGGCGTTTCCCGCCGCA
CTGCTGGCGACCCGCGCCCTGTCGCTCTCGGCGCTGCCGCGCGGCGGCCTGCCGGCCTGGTGGGCACGGGCG
CTGCGCTGGCCGGTGCGTGGCCTGCTGATCCTCCTGCGCAGCGTGCCGGAAATCGTCTGGGCGCTGCTGTTC
GTCCGCGCCGTGGGCCTGGGGCCCACCGCCGGGGTGCTGGCCATCGCCATCACCTATGCCGGCATGCTCGGC
AAGGTCTACGCGGAAATCTTCGAGTCGGTGGATCCGCGCCCCACCCGCGCCCTGCTGCTGGGCGGCGGATCG
CGGCTGGCGGCGTTCGCCTACGGGGTGCTGCCGAACGCCGCCGGGGAAATGATTTCCTACACCGTCTATCGC
TGGGAGTGCGCGATCCGCGCTTCGGTGGTGATGGGCTTCGTCGGCGCCGGCGGCCTCGGCCAGCAGATCGAC
CTGTCGCTGCGGATGTTCGCCGGCGGCGAGGTTGCCAGCATCCTGCTGACCTTCCTCCTGCTAGTCCTCCTC
GCCGACCTGCTGAGCCGCTTCCTGCGCGGGAGGCTGGCATGA
Translation:
MLNAASPPRDPAALPRLLLTLAALLLLWPGLRLSELDIPGLFSGDNARTMGGFLAGFWPLAHDPEFLALLGR
ATLETLAIATAGMALAWLLAFPAALLATRALSLSALPRGGLPAWWARALRWPVRGLLILLRSVPEIVWALLF
VRAVGLGPTAGVLAIAITYAGMLGKVYAEIFESVDPRPTRALLLGGGSRLAAFAYGVLPNAAGEMISYTVYR
WECAIRASVVMGFVGAGGLGQQIDLSLRMFAGGEVASILLTFLLLVLLADLLSRFLRGRLA*
AnnotationID:2940GeneID:2932
AnnotatorUID: urbach
Modification Date/Time: 2004-03-03 15:03:22
Gene Name:
Confidence Code:3
GeneProduct:probable ABC transporter permease component
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:5867




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23009




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2932
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4745
                           PA3315_tr
                           translation of PA3315
                           277
                           99.27
                           99.27
                           0
                           1378.0
     

     
     
136262
                           gb|AAG06703.1|AE004753_11
                           (AE004753) probable permease of ABC transporter [Pseudomonas aeruginosa PAO1]
                           277
                           99.27
                           99.27
                           0
                           1378.0
     

     
     
136263
                           gb|AAO54331.1|
                           (AE016858) phosphonate ABC transporter, permease protein, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           277
                           75.81
                           83.75
                           2
                           1033.0
     

     
     
136264
                           gb|AAN66451.1|AE016274_8
                           (AE016777) phosphate ABC transporter, permease protein, putative [Pseudomonas putida KT2440]
                           278
                           73.74
                           82.01
                           4
                           990.0
     

     
     
4746
                           PA3316_tr
                           translation of PA3316
                           291
                           38.48
                           52.23
                           49
                           464.0
     

     






      

          
GC ORFID: 45934How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3315Glimmer Score: 

          
Start: 3124319Stop: 3125152

          
Length: 834


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3315 translation of PA3315Homolog Bit Score 535.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3574 (ORF: BLASTX 402.0), t_PA3316 (ORF: BLASTX 178.0), psyr_15may02_Scaffold2_revised_gene3575 (ORF: BLASTX 177.0), t_PA3315 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCTGAACGCCGCTTCTCCACCGCGCGATCCCGCCGCCCTGCCGCGCCTGCTGCTGACCCTGGCCGCGTTG 
CTGCTGCTCTGGCCGGGGCTGCGCCTCAGCGAACTGGATATCCCCGGCCTGTTCAGCGGCGACAACGCGCGC 
ACCATGGGCGGTTTCCTCGCCGGCTTCTGGCCGCTGGCGCACGATCCCGAGTTCCTCGCCCTGCTCGGCCGC 
GCGACCCTGGAAACCCTCGCCATCGCCACCGCCGGCATGGCCCTGGCCTGGCTCCTGGCGTTTCCCGCCGCA 
CTGCTGGCGACCCGCGCCCTGTCGCTCTCGGCGCTGCCGCGCGGCGGCCTGCCGGCCTGGTGGGCACGGGCG 
CTGCGCTGGCCGGTGCGTGGCCTGCTGATCCTCCTGCGCAGCGTGCCGGAAATCGTCTGGGCGCTGCTGTTC 
GTCCGCGCCGTGGGCCTGGGGCCCACCGCCGGGGTGCTGGCCATCGCCATCACCTATGCCGGCATGCTCGGC 
AAGGTCTACGCGGAAATCTTCGAGTCGGTGGATCCGCGCCCCACCCGCGCCCTGCTGCTGGGCGGCGGATCG 
CGGCTGGCGGCGTTCGCCTACGGGGTGCTGCCGAACGCCGCCGGGGAAATGATTTCCTACACCGTCTATCGC 
TGGGAGTGCGCGATCCGCGCTTCGGTGGTGATGGGCTTCGTCGGCGCCGGCGGCCTCGGCCAGCAGATCGAC 
CTGTCGCTGCGGATGTTCGCCGGCGGCGAGGTTGCCAGCATCCTGCTGACCTTCCTCCTGCTAGTCCTCCTC 
GCCGACCTGCTGAGCCGCTTCCTGCGCGGGAGGCTGGCATGA