ViewGene
Locus Name:
GeneID:
Location:

GeneID:2931
TrivialName: PA14_26650
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_26650
PAO1 Ortholog Locus:PA2892
Sequence Length:825
Protein Length:274
Start: 2322977
Stop: 2322153
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06280.1|AE004715_6 (AE004715) probable short-chain dehydrogenase [Pseudomonas aeruginosa PAO1]
Identities = 274/274 (100%), Positives = 274/274 (100%)
Sequence:
ATGTCACTGCACGGCAAGACCCTGTTCATCACCGGCGCCAGCCGCGGCATCGGCCGGGAGATAGCCCTGCGC
GCCGCGCGCGATGGCGCCAACCTGGTGATCGCGGCGAAGAGCGCCGAGCCGCATCCGAAGCTGGAAGGCACC
ATCTTCAGCGTCGCCGCCGAGGTCGAGGCCGCCGGCGGCCAGGCCCTGCCGCTGCAACTCGACGTGCGCGAC
GAGCAGGCCGTGGCGGCGGCCATGGCCCGCGCCGCCGAACGCTTCGGCGGGATCGACGCGCTGGTCAACAAT
GCCGGGGCGATCCGCCTGGTCGGGGTGGAAAAGCTGGAGCCCAAGCGCTTCGACCTGATGTACCAGATCAAC
ACCCGCGCAGTGCTGGTCTGCAGCCAGGCCGCCCTGCCCTACCTGCGCAGGAGCGCCAACGGCCACATCCTC
AGCCTGTCGCCGCCGATCAACCTGGCCGGCAGGTGGTTCGCCCAGCACGGCCCCTACACGGTCACCAAGTAC
GGCATGAGCATGCTTACCCTGGGGATGCACGAGGAGTTCGGGAAATACGCCATCAGCGTCAACGCGCTGTGG
CCGAAGACCATGATCGCCACCGCCGCCATCGAGTTCGAGCTGGGCAGCCGTGACGCCTTCCGCCGCGCGCGC
ACCCCGGCGATCATGGCCGACGCCGCGCACGCCATTCTCACCAGCGAGGGGCGCAGCCTCAGCGGGCGCCTG
CTGGTCGACGAGGAATTGCTGCGCGAGCGCGGCCAGAGCGATTTCGAGCAGTACCGCTACGACCCGGAGGGT
GGCGCGCTGGTGCCCGACCTGTTCCTCGACTGA
Translation:
MSLHGKTLFITGASRGIGREIALRAARDGANLVIAAKSAEPHPKLEGTIFSVAAEVEAAGGQALPLQLDVRD
EQAVAAAMARAAERFGGIDALVNNAGAIRLVGVEKLEPKRFDLMYQINTRAVLVCSQAALPYLRRSANGHIL
SLSPPINLAGRWFAQHGPYTVTKYGMSMLTLGMHEEFGKYAISVNALWPKTMIATAAIEFELGSRDAFRRAR
TPAIMADAAHAILTSEGRSLSGRLLVDEELLRERGQSDFEQYRYDPEGGALVPDLFLD*
AnnotationID:2939GeneID:2931
AnnotatorUID: diggins
Modification Date/Time: 2005-04-07 11:11:57
Gene Name:
Confidence Code:3
GeneProduct:putative short-chain dehydrogenase
Cell Localization:()
Synonyms:PA2892
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1028,COG4221
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAK22387.1| (AE005713) short chain dehydrogenase family protein [Caulobacter
           crescentus CB15]
          Length = 285

 Score =  293 bits (750), Expect = 7e-79
 Identities = 148/273 (54%), Positives = 190/273 (69%), Gaps = 1/273 (0%)

>gb|AAM42555.1| (AE012445) short chain dehydrogenase [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
          Length = 271

 Score =  281 bits (718), Expect = 4e-75
 Identities = 152/274 (55%), Positives = 188/274 (68%), Gaps = 3/274 (1%)

>gb|AAM38274.1| (AE011989) short chain dehydrogenase [Xanthomonas axonopodis pv.
           citri str. 306]
          Length = 271

 Score =  277 bits (709), Expect = 4e-74
 Identities = 151/274 (55%), Positives = 186/274 (67%), Gaps = 3/274 (1%)








 
Structural Features:
COG1028, FabG, Dehydrogenases with different specificities 
(related to short-chain alcohol dehydrogenases) 
[Secondary metabolites biosynthesis, transport, and catabolism]
CD-Length = 251 residues,  94.4% aligned
Score =  120 bits (301), Expect = 2e-28
Identities = 78/246 (31%), Positives = 112/246 (45%), Gaps = 20/246 (8%)

COG4221, COG4221, Short-chain alcohol dehydrogenase of unknown specificity
CD-Length = 246 residues,  85.4% aligned
Score =  121 bits (305), Expect = 1e-28
Identities = 75/228 (32%), Positives = 109/228 (47%), Gaps = 21/228 (9%)






   
Genomic Context:






   
Comment:


















    ReferenceID:5865




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23007




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36157




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2931_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2931
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4744
                           PA2892_tr
                           translation of PA2892
                           274
                           99.99
                           99.99
                           0
                           1378.0
     

     
     
136253
                           gb|AAG06280.1|AE004715_6
                           (AE004715) probable short-chain dehydrogenase [Pseudomonas aeruginosa PAO1]
                           274
                           99.99
                           99.99
                           0
                           1378.0
     

     
     
136257
                           gb|AAM42555.1|
                           (AE012445) short chain dehydrogenase [Xanthomonas campestris pv. campestris str. ATCC 33913]
                           274
                           55.83
                           68.97
                           3
                           723.0
     

     
     
136258
                           gb|AAM38274.1|
                           (AE011989) short chain dehydrogenase [Xanthomonas axonopodis pv. citri str. 306]
                           274
                           55.47
                           68.24
                           3
                           714.0
     

     
     
136254
                           gb|AAK22387.1|
                           (AE005713) short chain dehydrogenase family protein [Caulobacter crescentus CB15]
                           286
                           51.74
                           66.43
                           13
                           751.0
     

     






      

          
GC ORFID: 45933How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2892Glimmer Score: 

          
Start: 2630949Stop: 2631773

          
Length: 825


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2892 translation of PA2892Homolog Bit Score 535.0

          
Other Homologs:  t_PA2892 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCACTGCACGGCAAGACCCTGTTCATCACCGGCGCCAGCCGCGGCATCGGCCGGGAGATAGCCCTGCGC 
GCCGCGCGCGATGGCGCCAACCTGGTGATCGCGGCGAAGAGCGCCGAGCCGCATCCGAAGCTGGAAGGCACC 
ATCTTCAGCGTCGCCGCCGAGGTCGAGGCCGCCGGCGGCCAGGCCCTGCCGCTGCAACTCGACGTGCGCGAC 
GAGCAGGCCGTGGCGGCGGCCATGGCCCGCGCCGCCGAACGCTTCGGCGGGATCGACGCGCTGGTCAACAAT 
GCCGGGGCGATCCGCCTGGTCGGGGTGGAAAAGCTGGAGCCCAAGCGCTTCGACCTGATGTACCAGATCAAC 
ACCCGCGCAGTGCTGGTCTGCAGCCAGGCCGCCCTGCCCTACCTGCGCAGGAGCGCCAACGGCCACATCCTC 
AGCCTGTCGCCGCCGATCAACCTGGCCGGCAGGTGGTTCGCCCAGCACGGCCCCTACACGGTCACCAAGTAC 
GGCATGAGCATGCTTACCCTGGGGATGCACGAGGAGTTCGGGAAATACGCCATCAGCGTCAACGCGCTGTGG 
CCGAAGACCATGATCGCCACCGCCGCCATCGAGTTCGAGCTGGGCAGCCGTGACGCCTTCCGCCGCGCGCGC 
ACCCCGGCGATCATGGCCGACGCCGCGCACGCCATTCTCACCAGCGAGGGGCGCAGCCTCAGCGGGCGCCTG 
CTGGTCGACGAGGAATTGCTGCGCGAGCGCGGCCAGAGCGATTTCGAGCAGTACCGCTACGACCCGGAGGGT 
GGCGCGCTGGTGCCCGACCTGTTCCTCGACTGA