ViewGene
Locus Name:
GeneID:
Location:

GeneID:293
TrivialName: PA14_10200
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_10200
PAO1 Ortholog Locus:PA4156
Sequence Length:2085
Protein Length:694
Start: 875397
Stop: 877481
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07543.1|AE004832_3 (AE004832) probable TonB-dependent receptor [Pseudomonas aeruginosa PAO1]
Identities = 692/694 (99%), Positives = 693/694 (99%)
Sequence:
TTGAACGCCCGCACGCACCGCACGCTCAACCGGGGAATCGGCGTCGTCACGCTGTCCACCCTGCTCGCCTCG
CCATCGGCACTGGCCCGGGAAAACCCGCCCGCCGAGGACGAACCCGCCGCCCTCGAGGCGCTGGTCGTGACC
GGCGAGAAACGTGAACGCTCGCTGAAGGACACGGCGTCCTCGGTATCGCTCACCAGCGCCCGCGACATCGAC
CGCAAGCAGACCGGCAACGCCTCGGTCGCCGAGGTGATCAATGGCAGTCCCAACGTGGTCTACACCGACTCG
GTGGGCGCGCCGATCATCCGCGGCCAGGACACCCAGGGCCCGAACAACGGGCAGAACGTGTTCTGGGGTGGC
ACAGTGCCGCGGGCGACGATCAACCTCGATGGCCACTACCTGAACTACAACGAGATGTTCTTCGGCGCGACC
TCGGTCTGGGACGTCGACAGCATCGAGGTGTTCCGCGGCCCGCAGACCACCTCCCAGGGCGCCAACGCCATC
GCCGGGGCGATCATCGTCAACACCAAGGACCCGACCTTCAGCCCCGAGGCTGCCTACCAGGCGGAGATCGGC
AGCTACCATTCGCGGCGCAGCTCGATCGCAGTGTCCGGCCCGCTGGCGCAGGACTTCGCCGGGCGCCTGGCG
GTGGACTACGCGGGCCGCGACACCTTCATCGACTACGACAACCCGAAGTTCCAGGACAGCGGCACCGACCAG
GACTTCCGCGCCCTCAACGCGCGCGCCAAGCTGCTCTGGCTGCCCAGCGGAATTCCGGGCCTGGAGAGCAAG
TTCACCTTCTCCCACAACGACAGCAACCGCCCGACCCAGGAAGCGGCGACCCGCCCGTTCGACAAGCTCGAC
CATCGCTCGACCACCATGCCCAGCTGGGAGCAGGACACCAACACCAGCATCCTCGACGTCGCCTATGACCTC
GACAATGGCATCCGCCTGTTCAACCAGGCGCAGTACTCGCTGTCCTCGGTGCACCGCACCACCGGCGCGGGC
GGCGAGGGCGACGCCGACATCCGCCAGAAGAACGCCTCCAACGAATCGCGGATCAGCTTCGGCGAGCAGGAG
GACCGGATCAGCGGCATGGGCGGGGTCTACTACGCCCGCACCCGCACCGACGAGACACTGCACCTGCGCGGG
CTGTCGGCCTTCGACGACACGAAGAAGAACCTCGGTGTGTTCGGCGAGCTGAACTACCGCCTGAGCGACCGC
TGGACCCTGACCACCGGCCTGCGCTACCAGGAGGATCGCATCGAGCGCAGCGGCAACTCGGTGCTGGCGCCG
CGTCCGCTGGACTACCAGAAGACCTTCTCGGCCTTCCTGCCGAAAGTCTCCCTGGCCTTCGCCGCAACCCCG
GACTGGACCGTCGGCGGCCTGGTCAGCCGCGGCTACAACCCCGGCGGCGTGTCGCTCAACCTGACTACCCGC
AACTGGGCCTACTTCAAGGAAGAAACCATCTGGAACTACGAACTGTTCACCCGCGCCAGCCTGCTCGACGGC
CGCCTGCTGCTGAACGGCAACCTGTTCTTCATGGATTTCAAGGACGCCCAGTACAACATCCCGGTGGTGGTT
TCGCCGGGGGTGGCGCAGTCGTACACCATCAACGCCGAGAAGGCCCACGCCTACGGCATGGAGCTGGACCTC
GACTACCGCCTACGCGACGACCTGCGGCTGAAGGCCAGCGCCGGCGTGCTACGCACCCGGATCGACGAGATG
TCCGGCAATACCGGCTACGAGCACAACGAGTTCGCCCGCTCGCCGGGCTATACCCTCAGCTTCGGACCGAGC
TGGGACGTCACCGAGCGCCTCAACCTGAACGCCCAGGTGCGCTACCTGGACGGCTACTACTCGGACACCGCC
AACACCAAGGCCTACTCGATCAAGGCCTACACCCTCACCGACGCCCGCGCCAGCTACCGCTTCAACGACCAG
GTGCAGCTCTATGGCTACGTGAAGAACGTGTTCGACGACCGTTCGCCCACCTACATGCAGGAAAACCGGGGG
ATCGGTGGCATCGAGGCGAGCATGACGCAGCCGCGGACCCTCGGCATCGGCATCAAGGGCACCTTCTAG
Translation:
MNARTHRTLNRGIGVVTLSTLLASPSALARENPPAEDEPAALEALVVTGEKRERSLKDTASSVSLTSARDID
RKQTGNASVAEVINGSPNVVYTDSVGAPIIRGQDTQGPNNGQNVFWGGTVPRATINLDGHYLNYNEMFFGAT
SVWDVDSIEVFRGPQTTSQGANAIAGAIIVNTKDPTFSPEAAYQAEIGSYHSRRSSIAVSGPLAQDFAGRLA
VDYAGRDTFIDYDNPKFQDSGTDQDFRALNARAKLLWLPSGIPGLESKFTFSHNDSNRPTQEAATRPFDKLD
HRSTTMPSWEQDTNTSILDVAYDLDNGIRLFNQAQYSLSSVHRTTGAGGEGDADIRQKNASNESRISFGEQE
DRISGMGGVYYARTRTDETLHLRGLSAFDDTKKNLGVFGELNYRLSDRWTLTTGLRYQEDRIERSGNSVLAP
RPLDYQKTFSAFLPKVSLAFAATPDWTVGGLVSRGYNPGGVSLNLTTRNWAYFKEETIWNYELFTRASLLDG
RLLLNGNLFFMDFKDAQYNIPVVVSPGVAQSYTINAEKAHAYGMELDLDYRLRDDLRLKASAGVLRTRIDEM
SGNTGYEHNEFARSPGYTLSFGPSWDVTERLNLNAQVRYLDGYYSDTANTKAYSIKAYTLTDARASYRFNDQ
VQLYGYVKNVFDDRSPTYMQENRGIGGIEASMTQPRTLGIGIKGTF*
AnnotationID:303GeneID:293
AnnotatorUID: diggins
Modification Date/Time: 2005-03-31 06:06:45
Gene Name:
Confidence Code:3
GeneProduct:putative TonB-dependent receptor protein
Cell Localization:()
Synonyms:PA4156
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:cd01347,COG1629,COG4771
Secondary Functional Category(ies):inorganic ion transport and metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAL84235.1|AF454955_1 (AF454955) putative outer membrane iron receptor [Rhodovulum
           sulfidophilum]
          Length = 730

 Score =  525 bits (1351), Expect = e-148
 Identities = 296/678 (43%), Positives = 401/678 (59%), Gaps = 23/678 (3%)








 
Structural Features:
cd01347, ligand_gated_channel
CD-Length = 672 residues, 100.0% aligned
Score =  160 bits (405), Expect = 5e-40

COG1629, CirA, Outer membrane receptor proteins, mostly Fe transport 
[Inorganic ion transport and metabolism]
CD-Length = 768 residues,  97.8% aligned
Score =  145 bits (366), Expect = 1e-35
Identities = 156/763 (20%), Positives = 241/763 (31%), Gaps = 87/763 (11%)

COG4771, FepA, Outer membrane receptor for ferrienterochelin and colicins 
[Inorganic ion transport and metabolism]
CD-Length = 699 residues, 100.0% aligned
Score =  135 bits (340), Expect = 2e-32
Identities = 163/750 (21%), Positives = 275/750 (36%), Gaps = 115/750 (15%)






   
Genomic Context:






   
Comment:


















    ReferenceID:14103




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17731




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36891




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:293_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:293
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
482
                           PA4156_tr
                           translation of PA4156
                           694
                           99.71
                           99.85
                           0
                           3602.0
     

     
     
24792
                           gb|AAG07543.1|AE004832_3
                           (AE004832) probable TonB-dependent receptor [Pseudomonas aeruginosa PAO1]
                           694
                           99.56
                           99.85
                           0
                           3600.0
     

     
     
24793
                           gb|AAL84235.1|AF454955_1
                           (AF454955) putative outer membrane iron receptor [Rhodovulum sulfidophilum]
                           760
                           39.60
                           53.68
                           96
                           1367.0
     

     






      

          
GC ORFID: 43295How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4156Glimmer Score: 

          
Start: 4078540Stop: 4076456

          
Length: 2085


          
Start Codon: TTGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA4156 translation of PA4156Homolog Bit Score 1392.0

          
Other Homologs:  t_PA4156 (ORF: GLIMMER)

          
GC ORF Sequence

           
TTGAACGCCCGCACGCACCGCACGCTCAACCGGGGAATCGGCGTCGTCACGCTGTCCACCCTGCTCGCCTCG 
CCATCGGCACTGGCCCGGGAAAACCCGCCCGCCGAGGACGAACCCGCCGCCCTCGAGGCGCTGGTCGTGACC 
GGCGAGAAACGTGAACGCTCGCTGAAGGACACGGCGTCCTCGGTATCGCTCACCAGCGCCCGCGACATCGAC 
CGCAAGCAGACCGGCAACGCCTCGGTCGCCGAGGTGATCAATGGCAGTCCCAACGTGGTCTACACCGACTCG 
GTGGGCGCGCCGATCATCCGCGGCCAGGACACCCAGGGCCCGAACAACGGGCAGAACGTGTTCTGGGGTGGC 
ACAGTGCCGCGGGCGACGATCAACCTCGATGGCCACTACCTGAACTACAACGAGATGTTCTTCGGCGCGACC 
TCGGTCTGGGACGTCGACAGCATCGAGGTGTTCCGCGGCCCGCAGACCACCTCCCAGGGCGCCAACGCCATC 
GCCGGGGCGATCATCGTCAACACCAAGGACCCGACCTTCAGCCCCGAGGCTGCCTACCAGGCGGAGATCGGC 
AGCTACCATTCGCGGCGCAGCTCGATCGCAGTGTCCGGCCCGCTGGCGCAGGACTTCGCCGGGCGCCTGGCG 
GTGGACTACGCGGGCCGCGACACCTTCATCGACTACGACAACCCGAAGTTCCAGGACAGCGGCACCGACCAG 
GACTTCCGCGCCCTCAACGCGCGCGCCAAGCTGCTCTGGCTGCCCAGCGGAATTCCGGGCCTGGAGAGCAAG 
TTCACCTTCTCCCACAACGACAGCAACCGCCCGACCCAGGAAGCGGCGACCCGCCCGTTCGACAAGCTCGAC 
CATCGCTCGACCACCATGCCCAGCTGGGAGCAGGACACCAACACCAGCATCCTCGACGTCGCCTATGACCTC 
GACAATGGCATCCGCCTGTTCAACCAGGCGCAGTACTCGCTGTCCTCGGTGCACCGCACCACCGGCGCGGGC 
GGCGAGGGCGACGCCGACATCCGCCAGAAGAACGCCTCCAACGAATCGCGGATCAGCTTCGGCGAGCAGGAG 
GACCGGATCAGCGGCATGGGCGGGGTCTACTACGCCCGCACCCGCACCGACGAGACACTGCACCTGCGCGGG 
CTGTCGGCCTTCGACGACACGAAGAAGAACCTCGGTGTGTTCGGCGAGCTGAACTACCGCCTGAGCGACCGC 
TGGACCCTGACCACCGGCCTGCGCTACCAGGAGGATCGCATCGAGCGCAGCGGCAACTCGGTGCTGGCGCCG 
CGTCCGCTGGACTACCAGAAGACCTTCTCGGCCTTCCTGCCGAAAGTCTCCCTGGCCTTCGCCGCAACCCCG 
GACTGGACCGTCGGCGGCCTGGTCAGCCGCGGCTACAACCCCGGCGGCGTGTCGCTCAACCTGACTACCCGC 
AACTGGGCCTACTTCAAGGAAGAAACCATCTGGAACTACGAACTGTTCACCCGCGCCAGCCTGCTCGACGGC 
CGCCTGCTGCTGAACGGCAACCTGTTCTTCATGGATTTCAAGGACGCCCAGTACAACATCCCGGTGGTGGTT 
TCGCCGGGGGTGGCGCAGTCGTACACCATCAACGCCGAGAAGGCCCACGCCTACGGCATGGAGCTGGACCTC 
GACTACCGCCTACGCGACGACCTGCGGCTGAAGGCCAGCGCCGGCGTGCTACGCACCCGGATCGACGAGATG 
TCCGGCAATACCGGCTACGAGCACAACGAGTTCGCCCGCTCGCCGGGCTATACCCTCAGCTTCGGACCGAGC 
TGGGACGTCACCGAGCGCCTCAACCTGAACGCCCAGGTGCGCTACCTGGACGGCTACTACTCGGACACCGCC 
AACACCAAGGCCTACTCGATCAAGGCCTACACCCTCACCGACGCCCGCGCCAGCTACCGCTTCAACGACCAG 
GTGCAGCTCTATGGCTACGTGAAGAACGTGTTCGACGACCGTTCGCCCACCTACATGCAGGAAAACCGGGGG 
ATCGGTGGCATCGAGGCGAGCATGACGCAGCCGCGGACCCTCGGCATCGGCATCAAGGGCACCTTCTAG