ViewGene
Locus Name:
GeneID:
Location:

GeneID:2929
TrivialName: PA14_47330
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_47330
PAO1 Ortholog Locus:PA1307
Sequence Length:774
Protein Length:257
Start: 4216669
Stop: 4215896
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04696.1|AE004560_4 (AE004560) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 257/257 (100%), Positives = 257/257 (100%)
Sequence:
ATGTGTGAACTATTGGGCATGAGCGCCAACGTCCCGACGGACATCGTCTTCAGCTTCACCGGACTGATGCAG
CGCGGCGGCGGCACCGGCCCGCACCGCGACGGTTGGGGCATCGCCTTCTACGAAGGACGCGGCGTGCGGCTG
TTCCAGGACCCGCTGGCGAGCGTCGATTCGGAGGTGGCGCGGCTGGTGCAGCGCTTCCCGATCAAGAGCGAG
ACGGTCATCGGGCACATCCGCCAGGCCAACGTCGGCAAGGTCGGGCTGAGCAACACCCACCCCTTCATCCGC
GAACTCGGCGGGCGCTACTGGACCTTCGCGCACAATGGCCAACTGGCCGACTTCCAGCCCAAGCCCGGCTTC
TACCGCCCGGTCGGCGAGACCGACAGCGAGGCGGCCTTCTGCGACCTGCTGAACCGCGTGCGCCGGGCTTTC
CCCGAGCCGGTGCCGGTGGAGGTGCTGTTGCCGGTGCTGATCTCGGCCTGTGACGAATATCGCAAGAAAGGC
GTGTTCAATGCCCTGATCAGCGACGGCGACTGGCTGTTCACCTTCTGCTCCAGCAAACTCGCCTACATTACC
CGCCGCGCGCCGTTCGGCCCGGCACGGTTGAAGGATGCCGACCTGACCGTGGACTTCCATGCGGAAACCACG
CCGGACGACGTGGTCACGGTGATCGCCACCGAGCCGCTCACCGACAACGAGAACTGGACCTTGCAGCAGAGC
GGCGAGTGGGTCCTCTGGTGGGGCGGCGAGGTGTTGGCCAAGGGGCGGGTCTGA
Translation:
MCELLGMSANVPTDIVFSFTGLMQRGGGTGPHRDGWGIAFYEGRGVRLFQDPLASVDSEVARLVQRFPIKSE
TVIGHIRQANVGKVGLSNTHPFIRELGGRYWTFAHNGQLADFQPKPGFYRPVGETDSEAAFCDLLNRVRRAF
PEPVPVEVLLPVLISACDEYRKKGVFNALISDGDWLFTFCSSKLAYITRRAPFGPARLKDADLTVDFHAETT
PDDVVTVIATEPLTDNENWTLQQSGEWVLWWGGEVLAKGRV*
AnnotationID:2937GeneID:2929
AnnotatorUID: diggins
Modification Date/Time: 2005-02-23 05:05:30
Gene Name:
Confidence Code:3
GeneProduct:putative glutamine amidotransferase
Cell Localization:()
Synonyms:yafJ
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0121,pfam00310
Secondary Functional Category(ies):amino acid biosynthesis and metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>dbj|BAC60550.1| (AP005080) putative amidotransferase [Vibrio parahaemolyticus]
          Length = 281

 Score =  318 bits (814), Expect = 3e-86
 Identities = 153/254 (60%), Positives = 193/254 (75%), Gaps = 2/254 (0%)

>gb|AAN78854.1|AE016756_37 (AE016756) Hypothetical protein yafJ [Escherichia coli CFT073]
          Length = 260

 Score =  312 bits (800), Expect = 1e-84
 Identities = 152/252 (60%), Positives = 191/252 (75%), Gaps = 2/252 (0%)

>gb|AAO10299.1|AE016803_86 (AE016803) Predicted glutamine amidotransferase [Vibrio vulnificus
           CMCP6]
          Length = 282

 Score =  310 bits (795), Expect = 4e-84
 Identities = 152/246 (61%), Positives = 188/246 (76%), Gaps = 3/246 (1%)






 
Structural Features:
COG0121, COG0121, Predicted glutamine amidotransferase.
CD-Length = 252 residues, 100.0% aligned
Score =  289 bits (741), Expect = 2e-79
Identities = 134/258 (51%), Positives = 158/258 (61%), Gaps = 7/258 (2%)

pfam00310, GATase_2, Glutamine amidotransferases class-II.
CD-Length = 138 residues, 100.0% aligned
Score =  148 bits (375), Expect = 6e-37
Identities = 62/145 (42%), Positives = 74/145 (51%), Gaps = 15/145 (10%)







   
Genomic Context:






   
Comment:


















    ReferenceID:5861




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23003




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37476




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2929_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2929
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4741
                           PA1307_tr
                           translation of PA1307
                           257
                           99.99
                           99.99
                           0
                           1378.0
     

     
     
136124
                           gb|AAG04696.1|AE004560_4
                           (AE004560) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           257
                           99.99
                           99.99
                           0
                           1378.0
     

     
     
136125
                           gb|AAO57375.1|
                           (AE016870) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           262
                           79.00
                           83.96
                           5
                           1101.0
     

     
     
136126
                           gb|AAN70154.1|AE016654_11
                           (AE016791) conserved hypothetical protein [Pseudomonas putida KT2440]
                           257
                           76.26
                           83.65
                           0
                           1056.0
     

     
     
136142
                           gb|AAN50821.1|AE011517_9
                           (AE011517) conserved hypothetical protein [Leptospira interrogans serovar lai str. 56601]
                           259
                           59.07
                           72.20
                           3
                           782.0
     

     






      

          
GC ORFID: 45931How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1307Glimmer Score: 

          
Start: 737240Stop: 738013

          
Length: 774


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1307 translation of PA1307Homolog Bit Score 535.0

          
Other Homologs:  psyr_15may02_Scaffold10_revised_gene1742 (ORF: BLASTX 426.0), t_PA1307 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTGTGAACTATTGGGCATGAGCGCCAACGTCCCGACGGACATCGTCTTCAGCTTCACCGGACTGATGCAG 
CGCGGCGGCGGCACCGGCCCGCACCGCGACGGTTGGGGCATCGCCTTCTACGAAGGACGCGGCGTGCGGCTG 
TTCCAGGACCCGCTGGCGAGCGTCGATTCGGAGGTGGCGCGGCTGGTGCAGCGCTTCCCGATCAAGAGCGAG 
ACGGTCATCGGGCACATCCGCCAGGCCAACGTCGGCAAGGTCGGGCTGAGCAACACCCACCCCTTCATCCGC 
GAACTCGGCGGGCGCTACTGGACCTTCGCGCACAATGGCCAACTGGCCGACTTCCAGCCCAAGCCCGGCTTC 
TACCGCCCGGTCGGCGAGACCGACAGCGAGGCGGCCTTCTGCGACCTGCTGAACCGCGTGCGCCGGGCTTTC 
CCCGAGCCGGTGCCGGTGGAGGTGCTGTTGCCGGTGCTGATCTCGGCCTGTGACGAATATCGCAAGAAAGGC 
GTGTTCAATGCCCTGATCAGCGACGGCGACTGGCTGTTCACCTTCTGCTCCAGCAAACTCGCCTACATTACC 
CGCCGCGCGCCGTTCGGCCCGGCACGGTTGAAGGATGCCGACCTGACCGTGGACTTCCATGCGGAAACCACG 
CCGGACGACGTGGTCACGGTGATCGCCACCGAGCCGCTCACCGACAACGAGAACTGGACCTTGCAGCAGAGC 
GGCGAGTGGGTCCTCTGGTGGGGCGGCGAGGTGTTGGCCAAGGGGCGGGTCTGA