ViewGene
Locus Name:
GeneID:
Location:

GeneID:2928
TrivialName: PA14_49350
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_49350
PAO1 Ortholog Locus:PA1164
Sequence Length:813
Protein Length:270
Start: 4385634
Stop: 4384822
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04553.1|AE004546_8 (AE004546) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 269/270 (99%), Positives = 269/270 (99%)
Sequence:
ATGCAGGTGGATGAACAGCGCTTCGGCGGTATCGGCCGGTTGTACGGTCGCGAGGGGCTGCAACGCCTGGCC
GATAGCCACGTCGCGGTGGTCGGCATCGGCGGGGTCGGTTCCTGGGCGGCGGAAGCGCTGGCCCGCAGCGGC
GTCGGCGAGATTTCCCTGTTCGACCTCGATGATGTCTGCGTGACCAACACCAACCGCCAGGTGCATGCCATC
GAAGGCTCGGTGGGCAAGGCCAAGGTCGAGGTGATGGCGGCGCGCATCCGGGCCATCAACCCGGCCTGCCGG
GTCCACGCGGTGGCCGATTTCGTCACCCGCGAGACCATGGCCGAGTACATCGTCGACTTCGACTACCTGATC
GACTGCATCGACAGCGTGGCCGCCAAGGCCGCGCTGATCGCCTGGTGCAAGCGGCGCAAGATCCCGGTGATC
ACCACCGGCGGCGCCGGTGGCCAGGTCGACCCGACGCAGATCCAGGTCGCCGACCTGAACAAGACCTTCAAC
GACCCGCTGGCGGCCAAGGTGCGTTCCACCCTGCGCCGCGACTACAACTTCTCGCGCACGCCGGGGCGCACC
TACAGCGTGCCCTGCGTGTTCTCCAGCGAGCAGCTGCGCTACCCGAAGCCGGACGGCACGGTGTGCCAGTCG
AAGAGTTTCGTCGGCGAAGGGGTGAAGCTGGACTGCGCCGGCGGCTTCGGCGCGGTGATGATGGTCACCGCC
ACCTTCGGCATGGTCGCCGCCGCCCGCGCCGTCGAGCGCCTGGCGGAAGGCCGCGCGCTGCGGCCGTCGCGG
CGCACGCCGGGGAACGCCTGA
Translation:
MQVDEQRFGGIGRLYGREGLQRLADSHVAVVGIGGVGSWAAEALARSGVGEISLFDLDDVCVTNTNRQVHAI
EGSVGKAKVEVMAARIRAINPACRVHAVADFVTRETMAEYIVDFDYLIDCIDSVAAKAALIAWCKRRKIPVI
TTGGAGGQVDPTQIQVADLNKTFNDPLAAKVRSTLRRDYNFSRTPGRTYSVPCVFSSEQLRYPKPDGTVCQS
KSFVGEGVKLDCAGGFGAVMMVTATFGMVAAARAVERLAEGRALRPSRRTPGNA*
AnnotationID:2936GeneID:2928
AnnotatorUID: danlee
Modification Date/Time: 2005-07-29 14:02:14
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:(1) Cytoplasmic
Synonyms:PA1164
Cell Localization Confidence Code:3
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1179, cd00755
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG1179, Dinucleotide-utilizing enzymes... Score: 366, E. value: 2e-102
cd00755, YgdL_like, Family of activating enzymes (E1) of ubiquitin-like proteins related 
to the E.coli hypothetical protein ygdL. Score: 298, E. value: 6e-82






   
Genomic Context:






   
Comment:


















    ReferenceID:5859




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23001




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2928
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4740
                           PA1164_tr
                           translation of PA1164
                           270
                           99.62
                           99.62
                           0
                           1378.0
     

     
     
136081
                           gb|AAG04553.1|AE004546_8
                           (AE004546) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           270
                           99.62
                           99.62
                           0
                           1378.0
     

     
     
136082
                           gb|AAN67148.1|AE016343_8
                           (AE016779) ThiF family protein [Pseudomonas putida KT2440]
                           273
                           75.82
                           85.34
                           5
                           1087.0
     

     
     
136083
                           gb|AAO55045.1|
                           (AE016861) ThiF family protein [Pseudomonas syringae pv. tomato str. DC3000]
                           277
                           72.56
                           83.75
                           8
                           1056.0
     

     
     
136089
                           gb|AAB40462.1|
                           (U29581) ORF_f268 [Escherichia coli]
                           277
                           56.67
                           69.31
                           16
                           788.0
     

     






      

          
GC ORFID: 45930How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1164Glimmer Score: 

          
Start: 568274Stop: 569086

          
Length: 813


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1164 translation of PA1164Homolog Bit Score 535.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene4613 (ORF: BLASTX 414.0), t_PA1164 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCAGGTGGATGAACAGCGCTTCGGCGGTATCGGCCGGTTGTACGGTCGCGAGGGGCTGCAACGCCTGGCC 
GATAGCCACGTCGCGGTGGTCGGCATCGGCGGGGTCGGTTCCTGGGCGGCGGAAGCGCTGGCCCGCAGCGGC 
GTCGGCGAGATTTCCCTGTTCGACCTCGATGATGTCTGCGTGACCAACACCAACCGCCAGGTGCATGCCATC 
GAAGGCTCGGTGGGCAAGGCCAAGGTCGAGGTGATGGCGGCGCGCATCCGGGCCATCAACCCGGCCTGCCGG 
GTCCACGCGGTGGCCGATTTCGTCACCCGCGAGACCATGGCCGAGTACATCGTCGACTTCGACTACCTGATC 
GACTGCATCGACAGCGTGGCCGCCAAGGCCGCGCTGATCGCCTGGTGCAAGCGGCGCAAGATCCCGGTGATC 
ACCACCGGCGGCGCCGGTGGCCAGGTCGACCCGACGCAGATCCAGGTCGCCGACCTGAACAAGACCTTCAAC 
GACCCGCTGGCGGCCAAGGTGCGTTCCACCCTGCGCCGCGACTACAACTTCTCGCGCACGCCGGGGCGCACC 
TACAGCGTGCCCTGCGTGTTCTCCAGCGAGCAGCTGCGCTACCCGAAGCCGGACGGCACGGTGTGCCAGTCG 
AAGAGTTTCGTCGGCGAAGGGGTGAAGCTGGACTGCGCCGGCGGCTTCGGCGCGGTGATGATGGTCACCGCC 
ACCTTCGGCATGGTCGCCGCCGCCCGCGCCGTCGAGCGCCTGGCGGAAGGCCGCGCGCTGCGGCCGTCGCGG 
CGCACGCCGGGGAACGCCTGA