ViewGene
Locus Name:
GeneID:
Location:

GeneID:2927
TrivialName: PA14_49390
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_49390
PAO1 Ortholog Locus:PA1161
Sequence Length:804
Protein Length:267
Start: 4389721
Stop: 4390524
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04550.1|AE004546_5 (AE004546) rRNA methyltransferase [Pseudomonas aeruginosa PAO1]
Identities = 263/267 (98%), Positives = 265/267 (99%)
Sequence:
ATGCTGATCTGCCCGCTCTGCTCCGCCGCCCTGGGCGAGGTCGACAACGGCGTCGCCTGCCCCGCCGGGCAC
CGCTTCGACCGCGCCCGCCAGGGCTACCTGAACCTGCTGCCGGTGCAGCACAAGAAAAGCCTCGATCCGGGC
GACAACGCCGCCATGGTCGAGGCCCGTCGCCAGTTCCTCGGCGCCGGCCACTACGCGCCGCTGGCCCGGCGC
CTGGCCGAACTGGCCGTCGAACGCGCGCCGCGACGCTGGCTGGATATCGGCTGCGGCGAGGGCTACTACAGC
GCCCGGCTCGGCGAAGCCCTGGCCGGCGCCGAGGGCTACGCCCTGGATATCTCCCGCGAGGCGGTGAAACGC
GCCTGCCGCCGCGCGCCGCAGTTGTCCTGGCTGGTGGCGAGCATGGCCCGGCTGCCGCTGGCCGACGCCAGT
TGCGAGCTGATCGCCAGCGTGTTCAGCCCGATCGACTGGAACGAAGCCGTGCGCGTCCTCGCCCCCGGCGGC
GGCGTACTGCGCCTGGGCCCGGCCAGCGCGCACCTGCTGGAACTGCGCCAGCGGCTCTATGACGACGTGCGC
GACTACGCCGACGACAAGCACCTCGCCGGCCTGCCCGCGCAACTGAGCCTGCGCCACACCGAGACCCTCGAG
TTCCGCCTGGCGCTGGACAGCTACGACGCGCGGGAAAACCTCCTGGCCATGACCCCGCACGGCTGGCGGGTC
AACCCCGAGCGCCGCGCGCGAATCCTGGCCGAACCCTTCGAAGTCAGCGTGGCGGTGCGCTACGATTGGCTG
CAACGCGACTGA
Translation:
MLICPLCSAALGEVDNGVACPAGHRFDRARQGYLNLLPVQHKKSLDPGDNAAMVEARRQFLGAGHYAPLARR
LAELAVERAPRRWLDIGCGEGYYSARLGEALAGAEGYALDISREAVKRACRRAPQLSWLVASMARLPLADAS
CELIASVFSPIDWNEAVRVLAPGGGVLRLGPASAHLLELRQRLYDDVRDYADDKHLAGLPAQLSLRHTETLE
FRLALDSYDARENLLAMTPHGWRVNPERRARILAEPFEVSVAVRYDWLQRD*
AnnotationID:2935GeneID:2927
AnnotatorUID: danlee
Modification Date/Time: 2004-09-14 17:05:27
Gene Name:rrmA
Confidence Code:2
GeneProduct:rRNA methyltransferase
Cell Localization:()
Synonyms:PA1161
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(24) Transcription, RNA processing and degradation
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:5857




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22999




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2927
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4739
                           PA1161_tr
                           translation of PA1161
                           267
                           98.50
                           99.25
                           0
                           1379.0
     

     
     
136064
                           gb|AAG04550.1|AE004546_5
                           (AE004546) rRNA methyltransferase [Pseudomonas aeruginosa PAO1]
                           267
                           98.50
                           99.25
                           0
                           1379.0
     

     
     
136065
                           gb|AAN67145.1|AE016343_5
                           (AE016779) rRNA large subunit methyltransferase A, putative [Pseudomonas putida KT2440]
                           270
                           70.00
                           83.33
                           3
                           1022.0
     

     
     
136066
                           gb|AAO55042.1|
                           (AE016861) rRNA large subunit methyltransferase A, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           271
                           69.37
                           82.28
                           6
                           1016.0
     

     
     
136067
                           gb|AAL20750.1|
                           (AE008781) 23S rRNA m1G745 methyltransferase [Salmonella typhimurium LT2]
                           278
                           41.00
                           57.55
                           20
                           517.0
     

     






      

          
GC ORFID: 45929How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1161Glimmer Score: 

          
Start: 564187Stop: 563384

          
Length: 804


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1161 translation of PA1161Homolog Bit Score 535.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene4808 (ORF: BLASTX 392.0), t_PA1161 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCTGATCTGCCCGCTCTGCTCCGCCGCCCTGGGCGAGGTCGACAACGGCGTCGCCTGCCCCGCCGGGCAC 
CGCTTCGACCGCGCCCGCCAGGGCTACCTGAACCTGCTGCCGGTGCAGCACAAGAAAAGCCTCGATCCGGGC 
GACAACGCCGCCATGGTCGAGGCCCGTCGCCAGTTCCTCGGCGCCGGCCACTACGCGCCGCTGGCCCGGCGC 
CTGGCCGAACTGGCCGTCGAACGCGCGCCGCGACGCTGGCTGGATATCGGCTGCGGCGAGGGCTACTACAGC 
GCCCGGCTCGGCGAAGCCCTGGCCGGCGCCGAGGGCTACGCCCTGGATATCTCCCGCGAGGCGGTGAAACGC 
GCCTGCCGCCGCGCGCCGCAGTTGTCCTGGCTGGTGGCGAGCATGGCCCGGCTGCCGCTGGCCGACGCCAGT 
TGCGAGCTGATCGCCAGCGTGTTCAGCCCGATCGACTGGAACGAAGCCGTGCGCGTCCTCGCCCCCGGCGGC 
GGCGTACTGCGCCTGGGCCCGGCCAGCGCGCACCTGCTGGAACTGCGCCAGCGGCTCTATGACGACGTGCGC 
GACTACGCCGACGACAAGCACCTCGCCGGCCTGCCCGCGCAACTGAGCCTGCGCCACACCGAGACCCTCGAG 
TTCCGCCTGGCGCTGGACAGCTACGACGCGCGGGAAAACCTCCTGGCCATGACCCCGCACGGCTGGCGGGTC 
AACCCCGAGCGCCGCGCGCGAATCCTGGCCGAACCCTTCGAAGTCAGCGTGGCGGTGCGCTACGATTGGCTG 
CAACGCGACTGA