ViewGene
Locus Name:
GeneID:
Location:

GeneID:2925
TrivialName: PA14_67270
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_67270
PAO1 Ortholog Locus:PA5094
Sequence Length:831
Protein Length:276
Start: 6008731
Stop: 6007901
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08479.1|AE004922_4 (AE004922) probable ATP-binding component of ABC transporter [Pseudomonas aeruginosa PAO1]
Identities = 274/276 (99%), Positives = 275/276 (99%)
Sequence:
ATGAGCGGTGCGCAGATGAACAAGATCGAAGTGAAGAACGTGTTCAAGATCTTCGGCCCGCGCGCCGATGCC
GCGCTGGCGCTGATCCGCCAGGGACGCAGCAAGGCCGAAGTGCTGGCGCAGACCGGCTGCGTGGTCGGCGTC
AACGACCTGTCGCTGACCATCGGTGCTGGCGAGATCTTCGTGATCATGGGCCTGTCGGGTTCCGGCAAGTCG
ACCCTGGTGCGCCATTTCAACCGCCTGATCGACCCCACCAGCGGCGAGATACTGGTGGATGGCGAGGACATC
CTGCGCTACGACATGGAAGCCCTCCGGCAATTCCGCCGGCGCAAGATCAGCATGGTGTTCCAGAGTTTCGGC
CTGCTGCCGCACAAGAGCGTGCTCGACAATGTCGCCTACGGCCTGAAGGTTCGCGGCGAAAGCCGGGCGCAG
TGTCACGAGCGGGCCCTGCACTGGATCGCCACGGTGGGCCTGAAGGGCTACGAGAAGTCCTATCCGCACCAG
CTTTCCGGCGGCATGCGCCAGCGCGTCGGCCTGGCCCGCGCGCTGGCCGCCGACACCGAGATCATTCTCATG
GACGAGGCCTTCAGCGCCCTCGACCCGTTGATCCGCGCGGACATGCAGGACCAGTTGCTGGAACTGCAGAAA
ACCCTGCACAAGACCATCGTCTTCATCACCCACGACCTCGACGAGGCGGTACGCATCGGCAACCGCATCGCG
ATCCTCAAGGACGGCCAACTGATCCAGGTCGGCACACCACGGGAAATCCTCCACCAGCCGGCCGACGACTAC
GTCGACCGCTTCGTCCAGCGGCGGGTGGCGAACCTATGA
Translation:
MSGAQMNKIEVKNVFKIFGPRADAALALIRQGRSKAEVLAQTGCVVGVNDLSLTIGAGEIFVIMGLSGSGKS
TLVRHFNRLIDPTSGEILVDGEDILRYDMEALRQFRRRKISMVFQSFGLLPHKSVLDNVAYGLKVRGESRAQ
CHERALHWIATVGLKGYEKSYPHQLSGGMRQRVGLARALAADTEIILMDEAFSALDPLIRADMQDQLLELQK
TLHKTIVFITHDLDEAVRIGNRIAILKDGQLIQVGTPREILHQPADDYVDRFVQRRVANL*
AnnotationID:2933GeneID:2925
AnnotatorUID: danlee
Modification Date/Time: 2006-02-03 17:05:04
Gene Name:
Confidence Code:3
GeneProduct:putative ATP-binding component of ABC transporter
Cell Localization:()
Synonyms:PA5094, proV
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1126,cd00267,pfam00005
Secondary Functional Category(ies):amino acid transport and metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO58699.1| (AE016875) histidine ABC transporter, ATP-binding protein, putative
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 276

 Score =  474 bits (1219), Expect = e-133
Identities = 241/276 (87%), Positives = 256/276 (92%)

>emb|CAC47281.1| (AL591791) HISTIDINE TRANSPORT ATP-BINDING ABC TRANSPORTER PROTEIN
           [Sinorhizobium meliloti]
          Length = 275

 Score =  371 bits (953), Expect = e-102
 Identities = 182/267 (68%), Positives = 222/267 (83%)

>gb|AAL44612.1| (AE009311) ABC transporter, nucleotide binding/ATPase protein
           [proline/glycine betaine] [Agrobacterium tumefaciens
           str. C58 (U. Washington)]
          Length = 277

 Score =  366 bits (939), Expect = e-101
 Identities = 181/267 (67%), Positives = 222/267 (83%)








 
Structural Features:
COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component 
[Amino acid transport and metabolism]
CD-Length = 240 residues,  98.3% aligned
Score =  221 bits (564), Expect = 8e-59
Identities = 101/264 (38%), Positives = 149/264 (56%), Gaps = 29/264 (10%)

cd00267, ABC_ATPase, ABC (ATP-binding cassette) transporter nucleotide-binding domain
CD-Length = 217 residues,  92.6% aligned
Score =  199 bits (507), Expect = 4e-52
Identities = 90/207 (43%), Positives = 135/207 (65%), Gaps = 7/207 (3%)

pfam00005, ABC_tran, ABC transporter. 
CD-Length = 183 residues, 100.0% aligned
Score =  165 bits (418), Expect = 7e-42
Identities = 73/189 (38%), Positives = 114/189 (60%), Gaps = 7/189 (3%)







   
Genomic Context:






   
Comment:


















    ReferenceID:5853




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22995




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34976




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2925_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2925
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4729
                           PA5094_tr
                           translation of PA5094
                           276
                           99.27
                           99.63
                           0
                           1380.0
     

     
     
135645
                           gb|AAG08479.1|AE004922_4
                           (AE004922) probable ATP-binding component of ABC transporter [Pseudomonas aeruginosa PAO1]
                           276
                           99.27
                           99.63
                           0
                           1380.0
     

     
     
135646
                           gb|AAO58699.1|
                           (AE016875) histidine ABC transporter, ATP-binding protein, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           276
                           87.31
                           92.75
                           0
                           1219.0
     

     
     
135648
                           gb|AAF78099.1|AF111939_3
                           (AF111939) inner membrane ATPase protein [Sinorhizobium meliloti]
                           280
                           65.00
                           79.28
                           9
                           946.0
     

     
     
135647
                           emb|CAC47281.1|
                           (AL591791) HISTIDINE TRANSPORT ATP-BINDING ABC TRANSPORTER PROTEIN [Sinorhizobium meliloti]
                           280
                           65.00
                           79.28
                           9
                           946.0
     

     






      

          
GC ORFID: 45927How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5094Glimmer Score: 

          
Start: 5272416Stop: 5271586

          
Length: 831


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5094 translation of PA5094Homolog Bit Score 536.0

          
Other Homologs:  psyr_15may02_Scaffold6_revised_gene6901 (ORF: BLASTX 469.0), t_PA5094 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCGGTGCGCAGATGAACAAGATCGAAGTGAAGAACGTGTTCAAGATCTTCGGCCCGCGCGCCGATGCC 
GCGCTGGCGCTGATCCGCCAGGGACGCAGCAAGGCCGAAGTGCTGGCGCAGACCGGCTGCGTGGTCGGCGTC 
AACGACCTGTCGCTGACCATCGGTGCTGGCGAGATCTTCGTGATCATGGGCCTGTCGGGTTCCGGCAAGTCG 
ACCCTGGTGCGCCATTTCAACCGCCTGATCGACCCCACCAGCGGCGAGATACTGGTGGATGGCGAGGACATC 
CTGCGCTACGACATGGAAGCCCTCCGGCAATTCCGCCGGCGCAAGATCAGCATGGTGTTCCAGAGTTTCGGC 
CTGCTGCCGCACAAGAGCGTGCTCGACAATGTCGCCTACGGCCTGAAGGTTCGCGGCGAAAGCCGGGCGCAG 
TGTCACGAGCGGGCCCTGCACTGGATCGCCACGGTGGGCCTGAAGGGCTACGAGAAGTCCTATCCGCACCAG 
CTTTCCGGCGGCATGCGCCAGCGCGTCGGCCTGGCCCGCGCGCTGGCCGCCGACACCGAGATCATTCTCATG 
GACGAGGCCTTCAGCGCCCTCGACCCGTTGATCCGCGCGGACATGCAGGACCAGTTGCTGGAACTGCAGAAA 
ACCCTGCACAAGACCATCGTCTTCATCACCCACGACCTCGACGAGGCGGTACGCATCGGCAACCGCATCGCG 
ATCCTCAAGGACGGCCAACTGATCCAGGTCGGCACACCACGGGAAATCCTCCACCAGCCGGCCGACGACTAC 
GTCGACCGCTTCGTCCAGCGGCGGGTGGCGAACCTATGA