ViewGene
Locus Name:
GeneID:
Location:

GeneID:2924
TrivialName: PA14_57540
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_57540
PAO1 Ortholog Locus:PA4429
Sequence Length:783
Protein Length:260
Start: 5126613
Stop: 5125831
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07817.1|AE004857_8 (AE004857) probable cytochrome c1 precursor [Pseudomonas aeruginosa PAO1]
Identities = 260/260 (100%), Positives = 260/260 (100%)
Sequence:
ATGAAAAAGCAATTCGCTGCACTGATTCTGGCGGTACTGCCAGTCCTGGGTTTCGCCGCTGGCGGCCATGGG
CCGCAACTGGATCATGTCGATATCGACCTGACCGACAAGGCGGCCATGCAGGATGGCGCGCGTACCTTCGCC
AACTACTGCATGGGCTGCCATAGCGCCAAGTTCCAGCGTTACGAGCGTGTCGCCACCGACCTGGGCATTCCT
GCCGATCTGATGATGGAGAAGCTGGTGTTCACCGGCGCCAAGATCGGCGACCACATGGACATCGGCATGAAG
CCGGCCGACGCCAAGACCTGGTTCGGCGCCGCTCCGCCGGACCTGACCCTGGTTGCCCGCGTACGCGGCACC
GACTGGCTGTACAGCTACCTGCGCTCGTTCTACGAGGATCCCAAGCGTCCGTGGGGCGTGAACAACGTGATC
TTCCCCAACGTCGGCATGCCGAACGTCCTGGCGCCCCTGCAGGGACGCCAGGTGATCGGCTGCAAGCAGGTA
CAGGTGGTCGAGGATGGCAAGAAGCAGTTCGATCCGTTGACCGGTACCCCGCTGACTCACGAAGCTTGTGAC
CAGTTGACCGTGGTGCCGAAGACCGGCGAGCTGAACGAAGCCCAGTTCGACGAGAAGGTCAAGAACCTGGTG
ACCTTCCTGGCCTATTCGGCCAACCCGAACAAGCTGGCCTCCGAGCGTATCGGTACCTACGTCCTGCTCTAC
CTGGCCTTCTTCTTCGTATTCGCCTATCTCCTCAAGCGCGAGTACTGGAAGGACGTGCACTAA
Translation:
MKKQFAALILAVLPVLGFAAGGHGPQLDHVDIDLTDKAAMQDGARTFANYCMGCHSAKFQRYERVATDLGIP
ADLMMEKLVFTGAKIGDHMDIGMKPADAKTWFGAAPPDLTLVARVRGTDWLYSYLRSFYEDPKRPWGVNNVI
FPNVGMPNVLAPLQGRQVIGCKQVQVVEDGKKQFDPLTGTPLTHEACDQLTVVPKTGELNEAQFDEKVKNLV
TFLAYSANPNKLASERIGTYVLLYLAFFFVFAYLLKREYWKDVH*
AnnotationID:2932GeneID:2924
AnnotatorUID: diggins
Modification Date/Time: 2005-05-02 19:07:00
Gene Name:
Confidence Code:3
GeneProduct:putative cytochrome c1 precursor
Cell Localization:()
Synonyms:PA4429
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2857
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN66943.1|AE016322_10 (AE016778) ubiquinol--cytochrome c reductase, cytochrome c1
           [Pseudomonas putida KT2440]
          Length = 259

 Score =  449 bits (1155), Expect = e-126
 Identities = 217/260 (83%), Positives = 231/260 (88%), Gaps = 1/260 (0%)

>dbj|BAC58706.1| (AP005074) ubiquinol-cytochrome c reductase, cytochrome c1 [Vibrio
           parahaemolyticus]
          Length = 245

 Score =  251 bits (642), Expect = 2e-66
 Identities = 133/261 (50%), Positives = 173/261 (66%), Gaps = 20/261 (7%)








 
Structural Features:
COG2857, CYT1, Cytochrome c1 [Energy production and conversion]
CD-Length = 250 residues,  98.4% aligned
Score =  210 bits (536), Expect = 1e-55
Identities = 97/263 (36%), Positives = 128/263 (48%), Gaps = 20/263 (7%)

>gb|AAN53688.1|AE015508_4 (AE015508) ubiquinol-cytochrome c reductase, cytochrome c1
           [Shewanella oneidensis MR-1]
          Length = 231

 Score =  250 bits (638), Expect = 7e-66
 Identities = 133/260 (51%), Positives = 168/260 (64%), Gaps = 29/260 (11%)







   
Genomic Context:






   
Comment:


















    ReferenceID:5851




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22993




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:38121




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2924_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2924
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4728
                           PA4429_tr
                           translation of PA4429
                           260
                           99.99
                           99.99
                           0
                           1382.0
     

     
     
135628
                           gb|AAG07817.1|AE004857_8
                           (AE004857) probable cytochrome c1 precursor [Pseudomonas aeruginosa PAO1]
                           260
                           99.99
                           99.99
                           0
                           1382.0
     

     
     
135629
                           gb|AAN66943.1|AE016322_10
                           (AE016778) ubiquinol--cytochrome c reductase, cytochrome c1 [Pseudomonas putida KT2440]
                           260
                           83.46
                           88.84
                           1
                           1157.0
     

     
     
135631
                           gb|AAN53688.1|AE015508_4
                           (AE015508) ubiquinol-cytochrome c reductase, cytochrome c1 [Shewanella oneidensis MR-1]
                           260
                           51.15
                           64.61
                           29
                           660.0
     

     
     
135630
                           dbj|BAC58706.1|
                           (AP005074) ubiquinol-cytochrome c reductase, cytochrome c1 [Vibrio parahaemolyticus]
                           263
                           50.57
                           65.77
                           21
                           660.0
     

     






      

          
GC ORFID: 45926How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4429Glimmer Score: 

          
Start: 4390292Stop: 4389510

          
Length: 783


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA4429 translation of PA4429Homolog Bit Score 536.0

          
Other Homologs:  t_PA4429 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAAAAGCAATTCGCTGCACTGATTCTGGCGGTACTGCCAGTCCTGGGTTTCGCCGCTGGCGGCCATGGG 
CCGCAACTGGATCATGTCGATATCGACCTGACCGACAAGGCGGCCATGCAGGATGGCGCGCGTACCTTCGCC 
AACTACTGCATGGGCTGCCATAGCGCCAAGTTCCAGCGTTACGAGCGTGTCGCCACCGACCTGGGCATTCCT 
GCCGATCTGATGATGGAGAAGCTGGTGTTCACCGGCGCCAAGATCGGCGACCACATGGACATCGGCATGAAG 
CCGGCCGACGCCAAGACCTGGTTCGGCGCCGCTCCGCCGGACCTGACCCTGGTTGCCCGCGTACGCGGCACC 
GACTGGCTGTACAGCTACCTGCGCTCGTTCTACGAGGATCCCAAGCGTCCGTGGGGCGTGAACAACGTGATC 
TTCCCCAACGTCGGCATGCCGAACGTCCTGGCGCCCCTGCAGGGACGCCAGGTGATCGGCTGCAAGCAGGTA 
CAGGTGGTCGAGGATGGCAAGAAGCAGTTCGATCCGTTGACCGGTACCCCGCTGACTCACGAAGCTTGTGAC 
CAGTTGACCGTGGTGCCGAAGACCGGCGAGCTGAACGAAGCCCAGTTCGACGAGAAGGTCAAGAACCTGGTG 
ACCTTCCTGGCCTATTCGGCCAACCCGAACAAGCTGGCCTCCGAGCGTATCGGTACCTACGTCCTGCTCTAC 
CTGGCCTTCTTCTTCGTATTCGCCTATCTCCTCAAGCGCGAGTACTGGAAGGACGTGCACTAA