ViewGene

Locus Name:
GeneID:
Location:

GeneID: 2923

TrivialName: PA14_47920

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_47920

PAO1 Ortholog Locus: PA1260

Sequence Length: 822

Protein Length: 273

Start: 4265435

Stop: 4266256

Strand: +

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG04649.1|AE004555_9 (AE004555) probable binding protein component of ABC transporter [Pseudomonas aeruginosa PAO1] Identities = 272/273 (99%), Positives = 272/273 (99%)

Sequence:

ATGAATACCAAGAAGACCCTTGCCCTAGCCCTCACCGCTGCCCTGGGCTGTTCCCTCGCCGGTCTCGTCCAG
GCCGACAAGCTCGACGACATCATCGAGTCCGGCAAGCTGCGCTGCGCCGTCACCCTGGACTTTCCGCCGATG
GGCTCGCGCGATGCGCAGAACAACCCGGTGGGCTTCGACGTCGATTACTGCAACGACCTGGCGAAGGCCCTG
GACGTCAAGGCGGAGATCGTCGAGACGCCCTTTCCCGACCGCATCCCGGCACTGGTATCGGGTCGCGCCGAC
GTGATCGTCGCGTCCACCTCGGACACCCTGGAGCGGGCCAAGACCATCGGCATGAGCATCCCCTACTTCGCC
TTCGTCAAGGTGGTACTGACCCGCGAGGACACCGGCATCGCCAGCTACGAGGACCTCAAGGGCCGCCCGGTC
GGCGGCACCGCCGGCACCTTCGAGGCGCTGGCCCTGGAGAAGGACAGCAAGGCCTGGGGCGACGCCAAGGGC
AGCTTCCGCGCCTACCAGTCCGAGGCCGACACCGCCCTGGCGATCAGCCAGGGGCATATCGACGCCACGGTC
GTCTCTTCCACCGTCGCCGCCTCGTGGATCAAGTCGGGCAAGTACAAGGGCCTGAAGATCGCCGGCGACGCG
CCCTATGACATCGACTACGTGGCCCTCGGCGCCAAGCGCAACGAATACGGCCTGCTCAACTACCTGAACCTG
TTCATCAACCAGCAGGTGCGCACCGGCCGCTACGCCGAGCTGGCGCAGAAATGGGTCGGCGGCACGGCGCCG
GAGCTGACCACCAGCGCGGTCTACCGCTGA

Translation:

MNTKKTLALALTAALGCSLAGLVQADKLDDIIESGKLRCAVTLDFPPMGSRDAQNNPVGFDVDYCNDLAKAL
DVKAEIVETPFPDRIPALVSGRADVIVASTSDTLERAKTIGMSIPYFAFVKVVLTREDTGIASYEDLKGRPV
GGTAGTFEALALEKDSKAWGDAKGSFRAYQSEADTALAISQGHIDATVVSSTVAASWIKSGKYKGLKIAGDA
PYDIDYVALGAKRNEYGLLNYLNLFINQQVRTGRYAELAQKWVGGTAPELTTSAVYR*

AnnotationID:2931 GeneID:2923

AnnotatorUID: diggins

Modification Date/Time: 2005-02-22 12:12:24

Gene Name:

Confidence Code: 3

GeneProduct: putative binding protein component of ABC transporter

Cell Localization: ()

Synonyms: PA1260

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (27) Transport of small molecules

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs: smart00062,COG0834

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

>gb|AAL45472.1| (AE009396) ABC transporter, substrate binding protein [amino acid]
           [Agrobacterium tumefaciens str. C58 (U. Washington)]
          Length = 268

 Score =  358 bits (918), Expect = 2e-98
 Identities = 182/270 (67%), Positives = 211/270 (78%), Gaps = 3/270 (1%)

>emb|CAC48653.1| (AL603642) putative ABC transporter periplasmic amino acid-binding
           protein [Sinorhizobium meliloti]
          Length = 268

 Score =  355 bits (911), Expect = 2e-97
 Identities = 177/269 (65%), Positives = 204/269 (75%), Gaps = 2/269 (0%)

Structural Features:

smart00062, PBPb, Bacterial periplasmic substrate-binding proteins.
CD-Length = 222 residues,  99.1% aligned
Score =  150 bits (381), Expect = 1e-37
Identities = 73/225 (32%), Positives = 112/225 (49%), Gaps = 5/225 (2%)

COG0834, HisJ, ABC-type amino acid transport/signal transduction systems, 
periplasmic component/domain 
[Amino acid transport and metabolism / Signal transduction mechanisms]
CD-Length = 275 residues,  98.9% aligned
Score =  130 bits (327), Expect = 2e-31
Identities = 84/275 (30%), Positives = 117/275 (42%), Gaps = 11/275 (4%)

Genomic Context:

Comment:

ReferenceID:5849

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:22991

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:37539

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 2923_cdd.html

URL:

Homologs By Global Alignment

Gene ID:2923

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

4727 PA1260_tr translation of PA1260 273 99.63 99.63 0 1382.0

135624 gb|AAG04649.1|AE004555_9 (AE004555) probable binding protein component of ABC transporter [Pseudomonas aeruginosa PAO1] 273 99.63 99.63 0 1382.0

135625 gb|AAL45472.1| (AE009396) ABC transporter, substrate binding protein [amino acid] [Agrobacterium tumefaciens str. C58 (U. Washington)] 273 66.66 77.28 5 921.0

135626 gb|AAK88772.1| (AE008218) AGR_L_407p [Agrobacterium tumefaciens str. C58 (Cereon)] 273 66.66 77.28 5 921.0

135627 emb|CAC48653.1| (AL603642) putative ABC transporter periplasmic amino acid-binding protein [Sinorhizobium meliloti] 273 64.83 74.72 5 912.0

GC ORFID: `45925`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA1260`	Glimmer Score:
Start: `688474`	Stop: `687653`
Length: `822`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA1260 translation of PA1260`	Homolog Bit Score `536.0`
Other Homologs: `t_PA1260 (ORF: GLIMMER)`
GC ORF Sequence
ATGAATACCAAGAAGACCCTTGCCCTAGCCCTCACCGCTGCCCTGGGCTGTTCCCTCGCCGGTCTCGTCCAG GCCGACAAGCTCGACGACATCATCGAGTCCGGCAAGCTGCGCTGCGCCGTCACCCTGGACTTTCCGCCGATG GGCTCGCGCGATGCGCAGAACAACCCGGTGGGCTTCGACGTCGATTACTGCAACGACCTGGCGAAGGCCCTG GACGTCAAGGCGGAGATCGTCGAGACGCCCTTTCCCGACCGCATCCCGGCACTGGTATCGGGTCGCGCCGAC GTGATCGTCGCGTCCACCTCGGACACCCTGGAGCGGGCCAAGACCATCGGCATGAGCATCCCCTACTTCGCC TTCGTCAAGGTGGTACTGACCCGCGAGGACACCGGCATCGCCAGCTACGAGGACCTCAAGGGCCGCCCGGTC GGCGGCACCGCCGGCACCTTCGAGGCGCTGGCCCTGGAGAAGGACAGCAAGGCCTGGGGCGACGCCAAGGGC AGCTTCCGCGCCTACCAGTCCGAGGCCGACACCGCCCTGGCGATCAGCCAGGGGCATATCGACGCCACGGTC GTCTCTTCCACCGTCGCCGCCTCGTGGATCAAGTCGGGCAAGTACAAGGGCCTGAAGATCGCCGGCGACGCG CCCTATGACATCGACTACGTGGCCCTCGGCGCCAAGCGCAACGAATACGGCCTGCTCAACTACCTGAACCTG TTCATCAACCAGCAGGTGCGCACCGGCCGCTACGCCGAGCTGGCGCAGAAATGGGTCGGCGGCACGGCGCCG GAGCTGACCACCAGCGCGGTCTACCGCTGA