ViewGene
Locus Name:
GeneID:
Location:

GeneID:2922
TrivialName: PA14_63410
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_63410
PAO1 Ortholog Locus:PA4800
Sequence Length:801
Protein Length:266
Start: 5656435
Stop: 5655635
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08186.1|AE004893_4 (AE004893) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 265/266 (99%), Positives = 265/266 (99%)
Sequence:
ATGACGGATCTTGAACACGCGGTGGAAAGCAACCGACGCGCCTGGGACGCGTCCGCCGACAGTCACCTGCGT
GGCAGCGGCTGGCAGGAATTGTCGCTGGCGGTACAGGAAACCGGCTTCAGTTGCCTGGACGAGACCCTGGCT
GGCGTGCTGCGCAATCTGGACCTGGCCGGCAAGGCGGCGGTCCAGGTCGGCTGCAACAACGGCCGGGAAGTG
CTTTCGCTGTACGCCTTCGGCGTCGCGCGGGCGGTGGGGATCGACCAGTCCGCCGCCTTCCTCGCCCAGGCG
CGGCAACTGGCCGAGCGCTCGCCGCATCAGCCGCGTTTCGTCGAAGCCAATGCCTACGAGCTGCCGGCCGAG
CTGAACGGTCAGTTCGACCTGCTGCTGATCACCATCGGTGTGCTCAACTGGATGCCCGACATCGCGCGCTTC
TTCGCCTCGGTGAGCGGCCTGCTGAAGCCGGGCGGGCAATTGGCGATCTATGAGACCCACCCGTTCCTGGAG
ATGCTCGAACCCGAGTCGGAGCGACCGTTCGAACTGCGCAACGACTACTTCACCGACACGCCCCACGTATCC
CGGGAGGCCATCGTCTACGAAGGCAGCGGCAGCGATACCGGCATCGCCAGCTACTGGTACGTCCACCCGCTC
GGCGACATCCTCGGCGGGCTGCTCGGCGCCGGCCTGCGCCTGAGTCACTTCAAGGAGTACCCGCACTCGAAC
CGCGAGGAACTCTACGACCTCTACGAGGACGGACCGCTGGCGATCCCGATGTGCTACACGCTGGTCGCGGTC
AAGGCATGA
Translation:
MTDLEHAVESNRRAWDASADSHLRGSGWQELSLAVQETGFSCLDETLAGVLRNLDLAGKAAVQVGCNNGREV
LSLYAFGVARAVGIDQSAAFLAQARQLAERSPHQPRFVEANAYELPAELNGQFDLLLITIGVLNWMPDIARF
FASVSGLLKPGGQLAIYETHPFLEMLEPESERPFELRNDYFTDTPHVSREAIVYEGSGSDTGIASYWYVHPL
GDILGGLLGAGLRLSHFKEYPHSNREELYDLYEDGPLAIPMCYTLVAVKA*
AnnotationID:2930GeneID:2922
AnnotatorUID: diggins
Modification Date/Time: 2005-03-10 09:09:32
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA4800
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:5847




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22989




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37688




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2922_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2922
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4726
                           PA4800_tr
                           translation of PA4800
                           266
                           99.62
                           99.62
                           0
                           1384.0
     

     
     
135623
                           gb|AAG08186.1|AE004893_4
                           (AE004893) hypothetical protein PA4800 [Pseudomonas aeruginosa PAO1]
                           266
                           99.62
                           99.62
                           0
                           1384.0
     

     






      

          
GC ORFID: 45924How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4800Glimmer Score: 

          
Start: 4920115Stop: 4919315

          
Length: 801


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4800 translation of PA4800Homolog Bit Score 537.0

          
Other Homologs:  t_PA4800 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACGGATCTTGAACACGCGGTGGAAAGCAACCGACGCGCCTGGGACGCGTCCGCCGACAGTCACCTGCGT 
GGCAGCGGCTGGCAGGAATTGTCGCTGGCGGTACAGGAAACCGGCTTCAGTTGCCTGGACGAGACCCTGGCT 
GGCGTGCTGCGCAATCTGGACCTGGCCGGCAAGGCGGCGGTCCAGGTCGGCTGCAACAACGGCCGGGAAGTG 
CTTTCGCTGTACGCCTTCGGCGTCGCGCGGGCGGTGGGGATCGACCAGTCCGCCGCCTTCCTCGCCCAGGCG 
CGGCAACTGGCCGAGCGCTCGCCGCATCAGCCGCGTTTCGTCGAAGCCAATGCCTACGAGCTGCCGGCCGAG 
CTGAACGGTCAGTTCGACCTGCTGCTGATCACCATCGGTGTGCTCAACTGGATGCCCGACATCGCGCGCTTC 
TTCGCCTCGGTGAGCGGCCTGCTGAAGCCGGGCGGGCAATTGGCGATCTATGAGACCCACCCGTTCCTGGAG 
ATGCTCGAACCCGAGTCGGAGCGACCGTTCGAACTGCGCAACGACTACTTCACCGACACGCCCCACGTATCC 
CGGGAGGCCATCGTCTACGAAGGCAGCGGCAGCGATACCGGCATCGCCAGCTACTGGTACGTCCACCCGCTC 
GGCGACATCCTCGGCGGGCTGCTCGGCGCCGGCCTGCGCCTGAGTCACTTCAAGGAGTACCCGCACTCGAAC 
CGCGAGGAACTCTACGACCTCTACGAGGACGGACCGCTGGCGATCCCGATGTGCTACACGCTGGTCGCGGTC 
AAGGCATGA