ViewGene

Locus Name:
GeneID:
Location:

GeneID:2921
TrivialName: PA14_57110
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_57110
PAO1 Ortholog Locus:PA4394
Sequence Length:837
Protein Length:278
Start: 5088639
Stop: 5087803
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07782.1|AE004855_4 (AE004855) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 277/278 (99%), Positives = 278/278 (100%)
Sequence:
ATGGAATTGAACTACGACCGACTGGTGCAGCAGACCGAGTCCTGGCTGCCGATCGTGCTGGAGTACAGCGGC
AAGGTCGCCCTGGCGCTGCTGACCCTGGCGATCGGCTGGTGGCTGATCAACACCCTGACCGGCCGGGTCGGC
GGCCTGCTCGCCAGGCGCAGCGTCGACCGCACCCTGCAGGGCTTCGTCGGCAGCCTGGTGAGCATCGTCCTG
AAGATCCTGCTGGTGGTCAGCGTGGCTTCCATGATCGGCATCCAGACCACCAGCTTCGTCGCCGCCATCGGC
GCCGCCGGCCTGGCCATCGGTCTAGCCCTGCAGGGCAGCCTGGCTAACTTCGCTGGCGGCGTGCTGATCCTG
CTGTTCCGCCCGTTCAAGGTCGGCGACTGGATCGAGGCGCAGGGCGTGGCCGGCACCGTGGATTCGATCCTG
ATCTTCCACACCGTGCTGCGTAGCGGCGACAACAAGCGGATCATCGTGCCCAACGGGGCGCTGTCCAACGGA
ACGGTGACCAACTACTCCGCCGAGCCGCTGCGCAAGGTGATCTTCGACGTCGGCATCGACTACGACGCCGAC
CTGAAGAATGCGCAGAACATTCTCCTGGCCATGGCCGACGATCCGCGGGTTCTGAAGGACCCGGCACCGGTG
GCGGTGGTTTCCAATCTCGGCGAAAGCGCGATTACCCTGTCCCTGCGGGTCTGGGTGAAGAACGCCGACTAC
TGGGACGTGATGTTCATGTTCAACGAAAAGGCCCGCGACGCGCTGGGCAAGGAAGGTATCGGCATTCCCTTC
CCGCAGCGGGTGGTCAAGGTTGTGCAGGGCGCGATGGCCGACTGA
Translation:
MELNYDRLVQQTESWLPIVLEYSGKVALALLTLAIGWWLINTLTGRVGGLLARRSVDRTLQGFVGSLVSIVL
KILLVVSVASMIGIQTTSFVAAIGAAGLAIGLALQGSLANFAGGVLILLFRPFKVGDWIEAQGVAGTVDSIL
IFHTVLRSGDNKRIIVPNGALSNGTVTNYSAEPLRKVIFDVGIDYDADLKNAQNILLAMADDPRVLKDPAPV
AVVSNLGESAITLSLRVWVKNADYWDVMFMFNEKARDALGKEGIGIPFPQRVVKVVQGAMAD*
AnnotationID:2929GeneID:2921
AnnotatorUID: diggins
Modification Date/Time: 2005-05-02 13:01:20
Gene Name:
Confidence Code:3
GeneProduct:putative mechanosensitive ion channel family protein
Cell Localization:()
Synonyms:PA4394
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0668,pfam00924
Secondary Functional Category(ies):membrane proteins
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAO57841.1| (AE016871) mechanosensitive ion channel family protein [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 276

 Score =  372 bits (956), Expect = e-102
 Identities = 185/275 (67%), Positives = 226/275 (82%), Gaps = 2/275 (0%)

>gb|AAO77496.1| (AE016935) putative transport protein [Bacteroides thetaiotaomicron
           VPI-5482]
          Length = 303

 Score =  244 bits (622), Expect = 5e-64
 Identities = 121/265 (45%), Positives = 176/265 (66%), Gaps = 1/265 (0%)
Structural Features:
COG0668, MscS, Small-conductance mechanosensitive channel 
[Cell envelope biogenesis, outer membrane] 
CD-Length = 316 residues,  88.0% aligned
Score =  163 bits (414), Expect = 3e-41
Identities = 103/278 (37%), Positives = 153/278 (55%), Gaps = 10/278 (3%)

pfam00924, MS_channel, Mechanosensitive ion channel.
CD-Length = 205 residues, 100.0% aligned
Score =  163 bits (413), Expect = 6e-41
Identities = 72/205 (35%), Positives = 119/205 (58%), Gaps = 6/205 (2%)
Genomic Context:
Comment:
ReferenceID:5845
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:22987
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:25718
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:2921_cdd.html
URL:
Homologs By Global Alignment
Gene ID:2921

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
4725 PA4394_tr translation of PA4394 278 99.64 99.99 0 1384.0
135610 gb|AAG07782.1|AE004855_4 (AE004855) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 278 99.64 99.99 0 1384.0
135611 gb|AAN66976.1|AE016326_2 (AE016779) conserved hypothetical protein [Pseudomonas putida KT2440] 282 67.73 85.10 4 1024.0
135612 gb|AAO57841.1| (AE016871) mechanosensitive ion channel family protein [Pseudomonas syringae pv. tomato str. DC3000] 280 66.07 80.71 6 956.0
135614 gb|AAO35110.1| (AE015937) putative mechanosensitive ion-channel [Clostridium tetani E88] 283 44.16 66.07 19 610.0
GC ORFID: 45923How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4394Glimmer Score:
Start: 4352315Stop: 4351479
Length: 837
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA4394 translation of PA4394Homolog Bit Score 537.0
Other Homologs: psyr_15may02_Scaffold1_revised_gene1143 (ORF: BLASTX 322.0), t_PA4394 (ORF: GLIMMER)
GC ORF Sequence
ATGGAATTGAACTACGACCGACTGGTGCAGCAGACCGAGTCCTGGCTGCCGATCGTGCTGGAGTACAGCGGC
AAGGTCGCCCTGGCGCTGCTGACCCTGGCGATCGGCTGGTGGCTGATCAACACCCTGACCGGCCGGGTCGGC
GGCCTGCTCGCCAGGCGCAGCGTCGACCGCACCCTGCAGGGCTTCGTCGGCAGCCTGGTGAGCATCGTCCTG
AAGATCCTGCTGGTGGTCAGCGTGGCTTCCATGATCGGCATCCAGACCACCAGCTTCGTCGCCGCCATCGGC
GCCGCCGGCCTGGCCATCGGTCTAGCCCTGCAGGGCAGCCTGGCTAACTTCGCTGGCGGCGTGCTGATCCTG
CTGTTCCGCCCGTTCAAGGTCGGCGACTGGATCGAGGCGCAGGGCGTGGCCGGCACCGTGGATTCGATCCTG
ATCTTCCACACCGTGCTGCGTAGCGGCGACAACAAGCGGATCATCGTGCCCAACGGGGCGCTGTCCAACGGA
ACGGTGACCAACTACTCCGCCGAGCCGCTGCGCAAGGTGATCTTCGACGTCGGCATCGACTACGACGCCGAC
CTGAAGAATGCGCAGAACATTCTCCTGGCCATGGCCGACGATCCGCGGGTTCTGAAGGACCCGGCACCGGTG
GCGGTGGTTTCCAATCTCGGCGAAAGCGCGATTACCCTGTCCCTGCGGGTCTGGGTGAAGAACGCCGACTAC
TGGGACGTGATGTTCATGTTCAACGAAAAGGCCCGCGACGCGCTGGGCAAGGAAGGTATCGGCATTCCCTTC
CCGCAGCGGGTGGTCAAGGTTGTGCAGGGCGCGATGGCCGACTGA