ViewGene
Locus Name:
GeneID:
Location:

GeneID:2920
TrivialName: PA14_26920
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_26920
PAO1 Ortholog Locus:
Sequence Length:957
Protein Length:318
Start: 2341041
Stop: 2341997
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06262.1|AE004713_11 (AE004713) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 280/321 (87%), Positives = 282/321 (87%), Gaps = 7/321 (2%)
Sequence:
ATGCGCCTGCGCAACTGGCCGCGCTGGCAGCGCTGGCTGAACCGGCGGATACCGCCGGCGAGCAGCGTCGAG
CTGAACCAGCGCCGCGTATTCATCCTGCCGACCCGCCAGGGCGGCGCTTTTGGTCTGGCGCTGCTGGTGATG
CTGCTGGCGGCGATCAACTACCAGAACAGCCTGGCCTACGGGTTGACCTTCCTGCTGCTGTCCCTGGGCGTG
GTGACCATCCTCCATACCTATCGCAACCTTGCCGGCCTGCGCCTCACCGCGTTGGGAGCGGACCCGGTGTTC
GCCGGCGAGCGCGCCGGTTTCCGGGTGCGCCTGGAAAGCCCGCGGCGGGCGCGCCAGGCCATCGCCGTCGGC
TGGCCGGAGCGGCCGCTGGAATACGCCGACCTGGCAGGCGACGCGGCTGCCGAGGTGCTGCTGTTCCACCCG
ACCGAGCGACGCGGCTGGCTGCGGCCGGGGCGCCTGCGGGTGGAGAGTCGCTTTCCCCTCGGCCTGCTGGTG
GCctGGAGCTGGGTCGACCTGCgccCAGCAGGCgctggtCTaccctcggccgctggccggcgagcccgttcc
tcgcgcCGGGCGCGGAggATGccGAgGACCAGGGGCGCGCGCTGGCGAGCACGGGCGtCGACGACtaccaGG
GActgCgcgcctacccaGCCGGGCGACTCGCGGCGGCGCCTGCACTgGAAGGCGTTTTCCCGTGGCCAGGGG
CTGCTGGTGAAGGACTTCGCCGCGCTCGGCGGGGAAGACCTGTGGCTGGAATTCGAGCGCCTCGGCGGGGAT
CTCGAAAGTCGCCTGGGCCGTTTGTGCCATGCAGTCCTGGAACTCTCCGCGCGGCAGCAGCCCTATGGCCTG
GCGCTGCCCGGCACGCGCCTGCAACCGGCCAGCGGCGAGGCCCAGCGCGAGGCCTGCCTGCGCGCGCTGGCG
TTGTTCGGAGCGGCGCGATGA
Translation:
MRLRNWPRWQRWLNRRIPPASSVELNQRRVFILPTRQGGAFGLALLVMLLAAINYQNSLAYGLTFLLLSLGV
VTILHTYRNLAGLRLTALGADPVFAGERAGFRVRLESPRRARQAIAVGWPERPLEYADLAGDAAAEVLLFHP
TERRGWLRPGRLRVESRFPLGLLVAWSWVDLRPAGAGLPSAAGRRARSSRRARRMPRTRGARWRARASTTTR
DCAPTQPGDSRRRLHWKAFSRGQGLLVKDFAALGGEDLWLEFERLGGDLESRLGRLCHAVLELSARQQPYGL
ALPGTRLQPASGEAQREACLRALALFGAAR*
AnnotationID:2928GeneID:2920
AnnotatorUID: diggins
Modification Date/Time: 2004-12-02 20:08:50
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:5843




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22985




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36189




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2920_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2920
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4724
                           PA2874_tr
                           translation of PA2874
                           330
                           86.06
                           86.36
                           25
                           1398.0
     

     
     
135608
                           gb|AAG06262.1|AE004713_11
                           (AE004713) hypothetical protein PA2874 [Pseudomonas aeruginosa PAO1]
                           330
                           86.06
                           86.36
                           25
                           1398.0
     

     
     
135609
                           gb|AAO55765.1|
                           (AE016863) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           339
                           50.73
                           61.65
                           33
                           807.0
     

     






      

          
GC ORFID: 45922How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2874Glimmer Score: 

          
Start: 2612885Stop: 2611929

          
Length: 957


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2874 translation of PA2874Homolog Bit Score 537.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene1041 (ORF: BLASTX 312.0), t_PA2874 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGCCTGCGCAACTGGCCGCGCTGGCAGCGCTGGCTGAACCGGCGGATACCGCCGGCGAGCAGCGTCGAG 
CTGAACCAGCGCCGCGTATTCATCCTGCCGACCCGCCAGGGCGGCGCTTTTGGTCTGGCGCTGCTGGTGATG 
CTGCTGGCGGCGATCAACTACCAGAACAGCCTGGCCTACGGGTTGACCTTCCTGCTGCTGTCCCTGGGCGTG 
GTGACCATCCTCCATACCTATCGCAACCTTGCCGGCCTGCGCCTCACCGCGTTGGGAGCGGACCCGGTGTTC 
GCCGGCGAGCGCGCCGGTTTCCGGGTGCGCCTGGAAAGCCCGCGGCGGGCGCGCCAGGCCATCGCCGTCGGC 
TGGCCGGAGCGGCCGCTGGAATACGCCGACCTGGCAGGCGACGCGGCTGCCGAGGTGCTGCTGTTCCACCCG 
ACCGAGCGACGCGGCTGGCTGCGGCCGGGGCGCCTGCGGGTGGAGAGTCGCTTTCCCCTCGGCCTGCTGGTG 
GCctGGAGCTGGGTCGACCTGCgccCAGCAGGCgctggtCTaccctcggccgctggccggcgagcccgttcc 
tcgcgcCGGGCGCGGAggATGccGAgGACCAGGGGCGCGCGCTGGCGAGCACGGGCGtCGACGACtaccaGG 
GActgCgcgcctacccaGCCGGGCGACTCGCGGCGGCGCCTGCACTgGAAGGCGTTTTCCCGTGGCCAGGGG 
CTGCTGGTGAAGGACTTCGCCGCGCTCGGCGGGGAAGACCTGTGGCTGGAATTCGAGCGCCTCGGCGGGGAT 
CTCGAAAGTCGCCTGGGCCGTTTGTGCCATGCAGTCCTGGAACTCTCCGCGCGGCAGCAGCCCTATGGCCTG 
GCGCTGCCCGGCACGCGCCTGCAACCGGCCAGCGGCGAGGCCCAGCGCGAGGCCTGCCTGCGCGCGCTGGCG 
TTGTTCGGAGCGGCGCGATGA