ViewGene
Locus Name:
GeneID:
Location:

GeneID:292
TrivialName: PA14_21450
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_21450
PAO1 Ortholog Locus:PA3294
Sequence Length:2067
Protein Length:688
Start: 1858574
Stop: 1860640
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06682.1|AE004751_8 (AE004751) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 681/688 (98%), Positives = 683/688 (99%)
Sequence:
ATGTTCAACCCGGCCAACCAGACCCACTTCAGCCTCAGCCTCGACGGCCTCCGTCACGACCTGCAGGTTCTC
GAATTCAGCGGCCACGAAGGCATCAGTCGCCCCTACCGTTTCGAACTCGAACTGGTCAGCGAGCGCGCCGGC
CTCGACCTCGAAGCGCTCATGCACCGACCCGCCTTCCTCGCCTTCACCCCGCAGGGCCAGGGCGTCCACGGG
CTGGTCTACGGCGCCGCCCAGGCCGACGCGGGCAAGCGCCTGACCCGCTATCGCCTCACCCTCGTGCCGCAA
CTGGCCTACCTCGCGCAGCGCAGCAACCAGCGGATCTTCCAGCACCTCACGGTGCCGCAGATCGTCGCCCTG
GTCCTCGAGGAGCACGGCATCCTCGCCGACGCCTACCGCTTCCAGCTCGGCACCCGGTATCCCGAGCGCGAA
TACTGCGTGCAGTACGACGAAAGCGACCTGCATTTCGTCCAGCGCCTCTGTGCCGAAGAGGGCATCCATTTC
CATTTCCGGCACAGCGCCGAGGCGCACCTGCTGGTGTTCGGCGACGACCAGACGGTGTTCCCCCGCCTGGGC
CGTCCCACCGCCTACGTGCACGACAGCGGGCTGGTCGCCGACGAACCGGTGATCAAGCGCTTCAGCCTGCGC
CTGGCCAGCCGCACCACGCGCACCACCCGCCGCGACTACGACTTCGAGAAGCCGCGGCTGCTGCTGGAGGCC
GGCAACCGCCCCGCTGCCGACGCCCCGGCCGAGCCGGACCTGGAGGACTACGACTACCCCGGTCGCTTCGTC
GATCGCCAGCGCGGCAAGCTGCTCAGCCAGCGCGCCCTGGAGCGCCACCGCGCCGACCGGCGCCTGGGCGAA
GGGGTCAGCGACCAGCCGCTGCTGGTCAGCGGGCACTTCCTGGAGATCGCCGAGCACCCGCGCGCGGAGTGG
AACGACCTGTGGCTGCTCAGCGAAGTCTTCCACGAAGGCAAGCAGCCGCAGGTGCTGGAAGAGAACGTTACC
TCCGACACGTCGGCCAGCACGGACGACTTCCAGCAGGGCTACCGCAACCGCTTCCTCGCCACGCCCTGGGAG
GTGTTCTTCCGCCCGCCGCTGGAGCACCCGAAGCCGCGCGTGCTGGGCAGCCAGACCGCGGTGGTGACCGGC
CCGCCAGGCGAGGAAATCCACTGCGACCGCTACGGCCGGGTCAGGGTGCAGTTCCACTGGGACCGCGAGGGC
CAGGGCGACGACAAGAGCAGTTGCTGGCTGCGCGTAGCCAGCGGTTGGGCCGGCAACGGCTATGGCGGCATC
GTCATTCCGCGGGTCGGCATGGAAGTGCTGGTGGACTTCCTCGAAGGCGATCCCGACCAGCCGCTGGTCAGC
GGCTGCGTCTACCACGCCGCCCACCCGGTGCCCTACGAGTTGCCGGCGAACCAGACCCGCAGCGTCTTCAAG
AGCCTCAGCAGCCCTGGCGGCGGTGGCTACAACGAGCTGCGCATCGAGGATCGCAAGGGCCAGGAACAGATC
TTCGTCCATGCCCAGCGCGACTGGGACGAGAACATCGAGCATGACCAGAAGATCCGCGTCGGCCACGAACGC
CACGACACCGTGGAGGCGAACAGCTACAGCGAGTTCAAGGCCGAGGAGCATCACACCGTGCACGGAGAGCGC
AAGGTCGAGCTGAAGGCCGATGACCATCTGACGGTCGGCGACAGCCAGCACGTGAAGCTCGGTCGTGCCTAC
CTGGCCAGGGCCGGGCGCGAGATCCACCTGAAGGCCGGGCAGAAGATGGTGATCGAGGCTGACAGCGAACTG
ACGGTGAAGGCCGGCGGCAGCTTCATCCGGCTCGACGCAAGCGGCATCGCCATCAGCGGCCCGCTGGCACGG
ATCAATGCAGGCGGCGCGCCGGGAAGCGGCTCGGGGATCGCGATCAAGATGCCGCGGGTGCCGGGCATGGCC
GACCAGGACAGCCCCGGCGCGCCACCCGAGGCGGTCGCGGCCAACCTGCCGCCGCGGCAACCGGTTTGCGAA
GAGTGCCTGCTACAGGCGAAGAAAAGAGGCCAGGCGCTCGCCGAGCGCTGA
Translation:
MFNPANQTHFSLSLDGLRHDLQVLEFSGHEGISRPYRFELELVSERAGLDLEALMHRPAFLAFTPQGQGVHG
LVYGAAQADAGKRLTRYRLTLVPQLAYLAQRSNQRIFQHLTVPQIVALVLEEHGILADAYRFQLGTRYPERE
YCVQYDESDLHFVQRLCAEEGIHFHFRHSAEAHLLVFGDDQTVFPRLGRPTAYVHDSGLVADEPVIKRFSLR
LASRTTRTTRRDYDFEKPRLLLEAGNRPAADAPAEPDLEDYDYPGRFVDRQRGKLLSQRALERHRADRRLGE
GVSDQPLLVSGHFLEIAEHPRAEWNDLWLLSEVFHEGKQPQVLEENVTSDTSASTDDFQQGYRNRFLATPWE
VFFRPPLEHPKPRVLGSQTAVVTGPPGEEIHCDRYGRVRVQFHWDREGQGDDKSSCWLRVASGWAGNGYGGI
VIPRVGMEVLVDFLEGDPDQPLVSGCVYHAAHPVPYELPANQTRSVFKSLSSPGGGGYNELRIEDRKGQEQI
FVHAQRDWDENIEHDQKIRVGHERHDTVEANSYSEFKAEEHHTVHGERKVELKADDHLTVGDSQHVKLGRAY
LARAGREIHLKAGQKMVIEADSELTVKAGGSFIRLDASGIAISGPLARINAGGAPGSGSGIAIKMPRVPGMA
DQDSPGAPPEAVAANLPPRQPVCEECLLQAKKRGQALAER*
AnnotationID:302GeneID:292
AnnotatorUID: diggins
Modification Date/Time: 2005-04-15 07:07:43
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA3294
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO58837.1| (AE016875) Rhs element Vgr protein [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 678

 Score =  990 bits (2560), Expect = 0.0
 Identities = 470/668 (70%), Positives = 548/668 (82%), Gaps = 1/668 (0%)








 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:587




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17729




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32259




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:292_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:292
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
478
                           PA3294_tr
                           translation of PA3294
                           688
                           98.98
                           99.27
                           0
                           3605.0
     

     
     
24781
                           gb|AAG06682.1|AE004751_8
                           (AE004751) hypothetical protein PA3294 [Pseudomonas aeruginosa PAO1]
                           688
                           98.98
                           99.27
                           0
                           3605.0
     

     
     
479
                           PA3486_tr
                           translation of PA3486
                           817
                           79.43
                           80.17
                           138
                           3412.0
     

     
     
24782
                           gb|AAG06874.1|AE004769_7
                           (AE004769) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           817
                           79.43
                           80.17
                           138
                           3412.0
     

     
     
480
                           PA5266_tr
                           translation of PA5266
                           714
                           68.90
                           77.87
                           49
                           2613.0
     

     






      

          
GC ORFID: 43294How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3294Glimmer Score: 

          
Start: 3095357Stop: 3093291

          
Length: 2067


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3294 translation of PA3294Homolog Bit Score 1393.0

          
Other Homologs:  t_PA5266 (ORF: BLASTX 1013.0), t_PA3294 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTTCAACCCGGCCAACCAGACCCACTTCAGCCTCAGCCTCGACGGCCTCCGTCACGACCTGCAGGTTCTC 
GAATTCAGCGGCCACGAAGGCATCAGTCGCCCCTACCGTTTCGAACTCGAACTGGTCAGCGAGCGCGCCGGC 
CTCGACCTCGAAGCGCTCATGCACCGACCCGCCTTCCTCGCCTTCACCCCGCAGGGCCAGGGCGTCCACGGG 
CTGGTCTACGGCGCCGCCCAGGCCGACGCGGGCAAGCGCCTGACCCGCTATCGCCTCACCCTCGTGCCGCAA 
CTGGCCTACCTCGCGCAGCGCAGCAACCAGCGGATCTTCCAGCACCTCACGGTGCCGCAGATCGTCGCCCTG 
GTCCTCGAGGAGCACGGCATCCTCGCCGACGCCTACCGCTTCCAGCTCGGCACCCGGTATCCCGAGCGCGAA 
TACTGCGTGCAGTACGACGAAAGCGACCTGCATTTCGTCCAGCGCCTCTGTGCCGAAGAGGGCATCCATTTC 
CATTTCCGGCACAGCGCCGAGGCGCACCTGCTGGTGTTCGGCGACGACCAGACGGTGTTCCCCCGCCTGGGC 
CGTCCCACCGCCTACGTGCACGACAGCGGGCTGGTCGCCGACGAACCGGTGATCAAGCGCTTCAGCCTGCGC 
CTGGCCAGCCGCACCACGCGCACCACCCGCCGCGACTACGACTTCGAGAAGCCGCGGCTGCTGCTGGAGGCC 
GGCAACCGCCCCGCTGCCGACGCCCCGGCCGAGCCGGACCTGGAGGACTACGACTACCCCGGTCGCTTCGTC 
GATCGCCAGCGCGGCAAGCTGCTCAGCCAGCGCGCCCTGGAGCGCCACCGCGCCGACCGGCGCCTGGGCGAA 
GGGGTCAGCGACCAGCCGCTGCTGGTCAGCGGGCACTTCCTGGAGATCGCCGAGCACCCGCGCGCGGAGTGG 
AACGACCTGTGGCTGCTCAGCGAAGTCTTCCACGAAGGCAAGCAGCCGCAGGTGCTGGAAGAGAACGTTACC 
TCCGACACGTCGGCCAGCACGGACGACTTCCAGCAGGGCTACCGCAACCGCTTCCTCGCCACGCCCTGGGAG 
GTGTTCTTCCGCCCGCCGCTGGAGCACCCGAAGCCGCGCGTGCTGGGCAGCCAGACCGCGGTGGTGACCGGC 
CCGCCAGGCGAGGAAATCCACTGCGACCGCTACGGCCGGGTCAGGGTGCAGTTCCACTGGGACCGCGAGGGC 
CAGGGCGACGACAAGAGCAGTTGCTGGCTGCGCGTAGCCAGCGGTTGGGCCGGCAACGGCTATGGCGGCATC 
GTCATTCCGCGGGTCGGCATGGAAGTGCTGGTGGACTTCCTCGAAGGCGATCCCGACCAGCCGCTGGTCAGC 
GGCTGCGTCTACCACGCCGCCCACCCGGTGCCCTACGAGTTGCCGGCGAACCAGACCCGCAGCGTCTTCAAG 
AGCCTCAGCAGCCCTGGCGGCGGTGGCTACAACGAGCTGCGCATCGAGGATCGCAAGGGCCAGGAACAGATC 
TTCGTCCATGCCCAGCGCGACTGGGACGAGAACATCGAGCATGACCAGAAGATCCGCGTCGGCCACGAACGC 
CACGACACCGTGGAGGCGAACAGCTACAGCGAGTTCAAGGCCGAGGAGCATCACACCGTGCACGGAGAGCGC 
AAGGTCGAGCTGAAGGCCGATGACCATCTGACGGTCGGCGACAGCCAGCACGTGAAGCTCGGTCGTGCCTAC 
CTGGCCAGGGCCGGGCGCGAGATCCACCTGAAGGCCGGGCAGAAGATGGTGATCGAGGCTGACAGCGAACTG 
ACGGTGAAGGCCGGCGGCAGCTTCATCCGGCTCGACGCAAGCGGCATCGCCATCAGCGGCCCGCTGGCACGG 
ATCAATGCAGGCGGCGCGCCGGGAAGCGGCTCGGGGATCGCGATCAAGATGCCGCGGGTGCCGGGCATGGCC 
GACCAGGACAGCCCCGGCGCGCCACCCGAGGCGGTCGCGGCCAACCTGCCGCCGCGGCAACCGGTTTGCGAA 
GAGTGCCTGCTACAGGCGAAGAAAAGAGGCCAGGCGCTCGCCGAGCGCTGA