ViewGene
Locus Name:
GeneID:
Location:

GeneID:2919
TrivialName: PA14_12410
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_12410
PAO1 Ortholog Locus:PA3975
Sequence Length:798
Protein Length:265
Start: 1069069
Stop: 1068272
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07362.1|AE004815_6 (AE004815) phosphomethylpyrimidine kinase [Pseudomonas aeruginosa PAO1]
Identities = 265/265 (100%), Positives = 265/265 (100%)
Sequence:
ATGAAAACACCGACTTCCCGCCCCGTAGTGCTCTGCCTGTCCGGTCACGACCCCAGTGGTGGCGCCGGACTG
CAAGCCGACATCGAAGCCCTGCTCGCCCAGGGCTGCCACGCCGCCCCGGCGGTCACCGCGCTGACCGTGCAG
GACACCGTCAACGTCAGCGACTTCCGCGTCCTCGACCGCGAGTGGGTGCTGGCCCAGGCCAACGCCGTACTC
GCCGACCTGCCCGTCGCGGCGGTCAAGCTGGGTATGCTCGGTTCGCTGGAGATGGTCGACACGGTGGCCGAG
ATCCTCGCCGCCCACCCGCACTTGCCGGTGGTCTGCGATCCGGTGCTGCGCGCCGGCGGCGGCGGTGCGCTG
GGCAAGGGCGACGTCGGCTTCGCCATGCGCGAGCGGCTGCTGCCGCGCGCCACCATCGCCACGCCGAACCTG
CCGGAAGCGCGCCTGCTCGCCGACCTGCCCGAGGGCAGCGCCGACCAGTGCGCCGAGCGCCTGCTGGAACAC
TGCGAGCACCTGTTGATCACCGGCGGACACGGCGACGAAAGCGAAGTGCACAATCGCCTGTACAGCCGCGAC
GGCAGCCGCCGCACCTTCACCTGCCAGCGCCTGCCCGGCAGCTACCATGGCTCCGGCTGCACCCTGGCCAGC
GCCCTGGCCGGTCGCATCGCCCTCGGCGAAGCTCTGCACGGCGCCGTACAGAGCGCCCTCGACTACACCTGG
CGGACCCTGCGCGACGCCGAGAGTCCGGGCCACGGCCAATACGTGCCGCGCCGCCTGCCCACCGACTTCTGT
CACTGA
Translation:
MKTPTSRPVVLCLSGHDPSGGAGLQADIEALLAQGCHAAPAVTALTVQDTVNVSDFRVLDREWVLAQANAVL
ADLPVAAVKLGMLGSLEMVDTVAEILAAHPHLPVVCDPVLRAGGGGALGKGDVGFAMRERLLPRATIATPNL
PEARLLADLPEGSADQCAERLLEHCEHLLITGGHGDESEVHNRLYSRDGSRRTFTCQRLPGSYHGSGCTLAS
ALAGRIALGEALHGAVQSALDYTWRTLRDAESPGHGQYVPRRLPTDFCH*
AnnotationID:2927GeneID:2919
AnnotatorUID: danlee
Modification Date/Time: 2006-01-27 16:04:43
Gene Name:thiD
Confidence Code:2
GeneProduct:phosphomethylpyrimidine kinase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(4) Biosynthesis of cofactors, prosthetic groups and carriers
Alternate Gene Product Name:ThiD
Functional Category Confidence Code:5
COGs:COG0351, KOG2598
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
dbj|BAA76742.1| (D84200) phosphomethylpyrimidine kinase [Escherichia coli]
          Length = 266

 Score =  138 bits (347), Expect = 4e-32
 Identities = 86/252 (34%), Positives = 133/252 (52%), Gaps = 13/252 (5%)






 
Structural Features:
gnl|CDD|10225 COG0351, ThiD, Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase
            [Coenzyme metabolism]
          Length = 263

 Score =  251 bits (642), Expect = 1e-67
 Identities = 108/254 (42%), Positives = 152/254 (59%), Gaps = 8/254 (3%)






   
Genomic Context:






   
Comment:


















    ReferenceID:5841




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22983




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32418




  
Author/Investigator(s):
        Mizote,T., Tsuda,M., Smith,D.D., Nakayama,H. and Nakazawa,T.





  
Title:
        Cloning and characterization of the thiD/J gene of Escherichia coli encoding a thiamin-synthesizing bifunctional enzyme, hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase




  
PubMed:
        10075431


MedLine:
        99173753




    
Source:
Microbiology 145 (Pt 2), 495-501 (1999)






    
Reference Type:Misc 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=04589382&dopt=GenPept









           
Homologs By Global Alignment 

           

       



     
Gene ID:2919
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4723
                           PA3975_tr
                           translation of PA3975
                           265
                           99.99
                           99.99
                           0
                           1387.0
     

     
     
135601
                           gb|AAG07362.1|AE004815_6
                           (AE004815) phosphomethylpyrimidine kinase [Pseudomonas aeruginosa PAO1]
                           265
                           99.99
                           99.99
                           0
                           1387.0
     

     
     
135602
                           gb|AAN70351.1|AE016677_2
                           (AE016792) phosphomethylpyrimidine kinase [Pseudomonas putida KT2440]
                           265
                           84.15
                           91.69
                           0
                           1181.0
     

     
     
135603
                           gb|AAO58227.1|
                           (AE016873) phosphomethylpyrimidine kinase, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           265
                           78.86
                           88.67
                           0
                           1119.0
     

     
     
135604
                           gb|AAQ57830.1|
                           (AE016910) hydroxymethylpyrimidine kinase [Chromobacterium violaceum ATCC 12472]
                           284
                           49.64
                           64.08
                           22
                           651.0
     

     






      

          
GC ORFID: 45921How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3975Glimmer Score: 

          
Start: 3884869Stop: 3885666

          
Length: 798


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3975 translation of PA3975Homolog Bit Score 538.0

          
Other Homologs:  psyr_15may02_Scaffold4_revised_gene5722 (ORF: BLASTX 439.0), t_PA3975 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAAACACCGACTTCCCGCCCCGTAGTGCTCTGCCTGTCCGGTCACGACCCCAGTGGTGGCGCCGGACTG 
CAAGCCGACATCGAAGCCCTGCTCGCCCAGGGCTGCCACGCCGCCCCGGCGGTCACCGCGCTGACCGTGCAG 
GACACCGTCAACGTCAGCGACTTCCGCGTCCTCGACCGCGAGTGGGTGCTGGCCCAGGCCAACGCCGTACTC 
GCCGACCTGCCCGTCGCGGCGGTCAAGCTGGGTATGCTCGGTTCGCTGGAGATGGTCGACACGGTGGCCGAG 
ATCCTCGCCGCCCACCCGCACTTGCCGGTGGTCTGCGATCCGGTGCTGCGCGCCGGCGGCGGCGGTGCGCTG 
GGCAAGGGCGACGTCGGCTTCGCCATGCGCGAGCGGCTGCTGCCGCGCGCCACCATCGCCACGCCGAACCTG 
CCGGAAGCGCGCCTGCTCGCCGACCTGCCCGAGGGCAGCGCCGACCAGTGCGCCGAGCGCCTGCTGGAACAC 
TGCGAGCACCTGTTGATCACCGGCGGACACGGCGACGAAAGCGAAGTGCACAATCGCCTGTACAGCCGCGAC 
GGCAGCCGCCGCACCTTCACCTGCCAGCGCCTGCCCGGCAGCTACCATGGCTCCGGCTGCACCCTGGCCAGC 
GCCCTGGCCGGTCGCATCGCCCTCGGCGAAGCTCTGCACGGCGCCGTACAGAGCGCCCTCGACTACACCTGG 
CGGACCCTGCGCGACGCCGAGAGTCCGGGCCACGGCCAATACGTGCCGCGCCGCCTGCCCACCGACTTCTGT 
CACTGA