ViewGene
Locus Name:
GeneID:
Location:

GeneID:2918
TrivialName: PA14_12680
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_12680
PAO1 Ortholog Locus:PA3957
Sequence Length:837
Protein Length:278
Start: 1087678
Stop: 1088514
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07344.1|AE004813_11 (AE004813) probable short-chain dehydrogenase [Pseudomonas aeruginosa PAO1]
Identities = 277/278 (99%), Positives = 277/278 (99%)
Sequence:
ATGCCGCGCAAGGTATTCAGCAGCCAGGCCTACCGCCACAAGGTGGTGCTGGTCAGTGGTGGTTGTTCTGGC
ATCGGTCGCGCGCTGGCGCTGCGTTTCGCCCGGGCCGGTGCGCGACTGGCGATCCTCGACCTCGACCAGGCG
GCGCTGGACAGCCTGGTGCAGCACCTGCGCGACCATCTCGGCGGCGAGGCGCTCGGCCTGCGCTGCGACGTC
GCCGACGCCGATGCGGTGGAGCGTGCCGTGGCGCTGGCGGTGGAGCGCTTCGGCGGCATCGACGTGCTGGTC
AACAACGCCGGCATCACCCACCGCGGTACCTTCGCCGAAACCGGCCTGGGGGTTTTCCGCAAGGTCATGGCG
GTGAACTTCTTCGGCGCCGTGCATTGCACCCGCGCGGCGCTGCCGAGCCTGCTCGAACGGCGCGGGCAGATC
GTCGTGCTCAGTTCGCTGACCGGTTTCGCCCCGTTGCTCTACCGCAGCGCCTACAACGCCAGCAAGCATGCC
TTGCACGGTCTGTTCGACACCCTGCGGATGGAGCTGGAAGGCACCGGCGTCAGCGTGACCCTGGCCTGCCCG
GGATTCACCGCCACCGACCTGCGCAAGAATGCGCTGGTCGGCGATGGCTCGGTGACTCGCCAGCCGGTGCAA
GTGCTGGGCAGCCAGGTGGCATCGCCGGTGGAGGTCGCCGAGGCGATCTTCCAGGGCGCCGCGCGGCGCCGG
CGCCTGCTGGTGCTGTCCAACGTCAACTGGCGGGCGCGGCTGCTGGCGCGCTTCTTTCCGCGTCTCTTCGAA
AAGCTGCTGGTGCCGCGCCTGTCGGGACTCAAGCCGCAACCCTGA
Translation:
MPRKVFSSQAYRHKVVLVSGGCSGIGRALALRFARAGARLAILDLDQAALDSLVQHLRDHLGGEALGLRCDV
ADADAVERAVALAVERFGGIDVLVNNAGITHRGTFAETGLGVFRKVMAVNFFGAVHCTRAALPSLLERRGQI
VVLSSLTGFAPLLYRSAYNASKHALHGLFDTLRMELEGTGVSVTLACPGFTATDLRKNALVGDGSVTRQPVQ
VLGSQVASPVEVAEAIFQGAARRRRLLVLSNVNWRARLLARFFPRLFEKLLVPRLSGLKPQP*
AnnotationID:2926GeneID:2918
AnnotatorUID: urbach
Modification Date/Time: 2004-05-21 17:05:27
Gene Name:
Confidence Code:3
GeneProduct:possible short-chain dehydrogenase
Cell Localization:()
Synonyms:PA3957
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:KOG1205, pfam00106, COG0300
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
gnl|CDD|18994 KOG1205, KOG1205, Predicted dehydrogenase
[Secondary metabolites biosynthesis, transport and catabolism]
Length = 282
Score =  202 bits (514), Expect = 9e-53
Identities = 103/270 (38%), Positives = 146/270 (54%), Gaps = 4/270 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:5839




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22981




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2918
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4720
                           PA3957_tr
                           translation of PA3957
                           278
                           99.64
                           99.64
                           0
                           1386.0
     

     
     
135589
                           gb|AAG07344.1|AE004813_11
                           (AE004813) probable short-chain dehydrogenase [Pseudomonas aeruginosa PAO1]
                           278
                           99.64
                           99.64
                           0
                           1386.0
     

     
     
4722
                           PA3511_tr
                           translation of PA3511
                           299
                           31.77
                           43.81
                           67
                           279.0
     

     
     
135596
                           gb|AAG06899.1|AE004771_8
                           (AE004771) probable short-chain dehydrogenase [Pseudomonas aeruginosa PAO1]
                           299
                           31.77
                           43.81
                           67
                           279.0
     

     
     
135599
                           emb|CAB51136.1|
                           (Y18817) oxidoreductase of short-chain [Streptomyces coelicolor A3(2)]
                           316
                           31.32
                           39.24
                           78
                           276.0
     

     






      

          
GC ORFID: 45920How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3957Glimmer Score: 

          
Start: 3866260Stop: 3865424

          
Length: 837


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3957 translation of PA3957Homolog Bit Score 538.0

          
Other Homologs:  t_PA4148 (ORF: BLASTX 116.0), t_PA3957 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCGCGCAAGGTATTCAGCAGCCAGGCCTACCGCCACAAGGTGGTGCTGGTCAGTGGTGGTTGTTCTGGC 
ATCGGTCGCGCGCTGGCGCTGCGTTTCGCCCGGGCCGGTGCGCGACTGGCGATCCTCGACCTCGACCAGGCG 
GCGCTGGACAGCCTGGTGCAGCACCTGCGCGACCATCTCGGCGGCGAGGCGCTCGGCCTGCGCTGCGACGTC 
GCCGACGCCGATGCGGTGGAGCGTGCCGTGGCGCTGGCGGTGGAGCGCTTCGGCGGCATCGACGTGCTGGTC 
AACAACGCCGGCATCACCCACCGCGGTACCTTCGCCGAAACCGGCCTGGGGGTTTTCCGCAAGGTCATGGCG 
GTGAACTTCTTCGGCGCCGTGCATTGCACCCGCGCGGCGCTGCCGAGCCTGCTCGAACGGCGCGGGCAGATC 
GTCGTGCTCAGTTCGCTGACCGGTTTCGCCCCGTTGCTCTACCGCAGCGCCTACAACGCCAGCAAGCATGCC 
TTGCACGGTCTGTTCGACACCCTGCGGATGGAGCTGGAAGGCACCGGCGTCAGCGTGACCCTGGCCTGCCCG 
GGATTCACCGCCACCGACCTGCGCAAGAATGCGCTGGTCGGCGATGGCTCGGTGACTCGCCAGCCGGTGCAA 
GTGCTGGGCAGCCAGGTGGCATCGCCGGTGGAGGTCGCCGAGGCGATCTTCCAGGGCGCCGCGCGGCGCCGG 
CGCCTGCTGGTGCTGTCCAACGTCAACTGGCGGGCGCGGCTGCTGGCGCGCTTCTTTCCGCGTCTCTTCGAA 
AAGCTGCTGGTGCCGCGCCTGTCGGGACTCAAGCCGCAACCCTGA